DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxn and pax2b

DIOPT Version :9

Sequence 1:NP_001261016.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_571715.1 Gene:pax2b / 60638 ZFINID:ZDB-GENE-001030-4 Length:386 Species:Danio rerio


Alignment Length:386 Identity:145/386 - (37%)
Similarity:173/386 - (44%) Gaps:92/386 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFYETGSIRPGSI 72
            |||||||||||||||||.||:|||:||..|||||||||||.||||||||||.|:||||||:||.|
Zfish    18 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVI 82

  Fly    73 GGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSINRILRNSGLWTD 137
            ||||.| ||||.||.||...|.:|..|||||||::|..:.:||..:|||:||||||:|       
Zfish    83 GGSKPK-VATPKVVDKIADYKRQNPTMFAWEIRDRLLAEGICDNDTVPSVSSINRIIR------- 139

  Fly   138 EMTSSQQNAAAAAAAAAAAAHQAGSGPSNGYGG-----QAPPPPVTVAPPTPAATPSIARYAKPP 197
              |..||           ..|.:..|.|....|     ....|||:.:...|..:.||......|
Zfish   140 --TKVQQ-----------PFHPSPDGTSLSTPGHTIIPSTASPPVSSSSNDPVGSYSINGILGIP 191

  Fly   198 ALMMNSAGEMPIKPAPKMPPSMGHGHSHGLNPNVSGLDLSYSALHKHWLWNPSLLYYTQAHIQAQ 262
                .|.||...:.|.....|.....|.|          |..:|.||...:.    :||..::| 
Zfish   192 ----RSNGEKRKRDADGSEGSAQSSDSQG----------SVESLRKHLRADA----FTQQQLEA- 237

  Fly   263 AAASGGQFLPYAGGYLPHAMAAAAASSTSALGGFTKSESSIDLSTPGAAGDALSDCDSGKSSPAA 327
                           |.......|...........|.|.:.:.|.| |....|.:.....||.||
Zfish   238 ---------------LDRVFERPAFPDVFPTSEHIKPEQASEYSLP-ALNTGLDEVKPSLSSSAA 286

  Fly   328 LSLTASGGGN----------------------GAGSAPEAS-----PGSTLSHSRKRNPYS 361
            ..|.||...:                      |.||.|.::     |||..|    .||||
Zfish   287 SDLGASVSQSYPVGRDMANTTLPGYPPHVPPTGQGSYPTSTLAGMVPGSEFS----GNPYS 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_001261016.1 HTH 5..133 CDD:304362 90/124 (73%)
pax2bNP_571715.1 PAX 15..139 CDD:128645 89/121 (74%)
Pax2_C 290..384 CDD:289189 14/58 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002430
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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