DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxn and pax5

DIOPT Version :9

Sequence 1:NP_001261016.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:XP_005170979.1 Gene:pax5 / 60636 ZFINID:ZDB-GENE-001030-2 Length:423 Species:Danio rerio


Alignment Length:394 Identity:152/394 - (38%)
Similarity:192/394 - (48%) Gaps:96/394 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 TGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFYETGSIR 68
            :|..|||||||||||||||||.||:|||:||..|||||||||||.||||||||||.|:|||||||
Zfish    15 SGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIR 79

  Fly    69 PGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSINRILRNSG 133
            ||.|||||.| ||||.||.||...|.:|..|||||||::|..:||||..||||:||||||:|   
Zfish    80 PGVIGGSKPK-VATPKVVDKIADYKRQNPTMFAWEIRDRLLAERVCDNDSVPSVSSINRIIR--- 140

  Fly   134 LWTDEMTSSQQNAAAAAAAAAAAAHQAGSGPSNGYGGQAPPPPVTVAPPTPAATPSIA---RYAK 195
                  |..||   ....:.|.:||...|               |||....:|..|.|   .|:.
Zfish   141 ------TKVQQ---PPGQSGAVSAHNLAS---------------TVAVTQVSAVTSDAAGSSYSI 181

  Fly   196 PPALMMNSAGEM-------PIKPAPKMPPSMGHGHSHGLNPNVSGLDLSYSALHKHW---LWNPS 250
            ...|.::|..:.       |::.:|     :.:||||      ||.|.    |.|..   |:.|.
Zfish   182 SGILGISSPADASKRKRDDPLQDSP-----LANGHSH------SGRDF----LRKQMRGELFTPQ 231

  Fly   251 LLYYTQAHIQAQAAASGGQFLPYAGGY-LPHAMAAAAASST------SALGGFTKSESSIDLSTP 308
            .|.........|         |:...| :|.:::...:.:|      |..||..:.::|:...|.
Zfish   232 QLEVLDHVFDRQ---------PFPDIYPIPDSISYKPSQTTDYSAMASLAGGLEEMKNSLANQTG 287

  Fly   309 GAAGDALSDCD-----SGKSSPAALSLTASGG--------GNGAGSAPEAS---PGSTLSHSRKR 357
            ...|..::...     ||:.    |:.|...|        |.|:.|.|..:   ||...|.|   
Zfish   288 AELGSTVAGPQSYPLVSGRD----LASTTLPGYPPHVPPTGQGSYSTPSLTGMVPGGDFSGS--- 345

  Fly   358 NPYS 361
             |||
Zfish   346 -PYS 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_001261016.1 HTH 5..133 CDD:304362 95/127 (75%)
pax5XP_005170979.1 PAX 16..140 CDD:128645 94/124 (76%)
Pax2_C 280..403 CDD:289189 19/77 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002430
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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