DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxn and Sdcbp

DIOPT Version :9

Sequence 1:NP_001261016.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_001091697.1 Gene:Sdcbp / 53378 MGIID:1337026 Length:299 Species:Mus musculus


Alignment Length:132 Identity:31/132 - (23%)
Similarity:45/132 - (34%) Gaps:49/132 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 LNPNVSGLDL--------SYSALHKHWLWNPSLLYYTQAHIQAQAAASGGQFLPYAGGYLPHAMA 283
            |.|::..|.:        :|||       ||:    :||.:...|:|:    ||..|...|... 
Mouse     3 LYPSLEDLKVDKVIQAQTAYSA-------NPA----SQAFVLVDASAA----LPPDGNLYPKLY- 51

  Fly   284 AAAASSTSALGGFTKSESSIDLSTPGAAGDALSDCDSGKSSPAALSLTASGG----------GNG 338
                ...|...|.:.:|:.|..|.|..:|           :||...|.|...          ||.
Mouse    52 ----PELSQYMGLSLNEAEICESMPMVSG-----------APAQGQLVARPSSVNYMVAPVTGND 101

  Fly   339 AG 340
            ||
Mouse   102 AG 103

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_001261016.1 HTH 5..133 CDD:304362
SdcbpNP_001091697.1 Interaction with PDCD6IP. /evidence=ECO:0000269|PubMed:22660413 2..103 29/130 (22%)
LYPX(n)L motif 1. /evidence=ECO:0000305|PubMed:22660413 3..7 2/3 (67%)
LYPX(n)L motif 2. /evidence=ECO:0000305|PubMed:22660413 46..50 1/3 (33%)
LYPX(n)L motif 3. /evidence=ECO:0000305|PubMed:22660413 50..54 0/8 (0%)
PDZ_signaling 113..192 CDD:238492
PDZ_signaling 197..270 CDD:238492
phosphatidylinositol-4, 5-bisphosphate-binding. /evidence=ECO:0000250|UniProtKB:O00560 251..252
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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