DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxn and Pax7

DIOPT Version :10

Sequence 1:NP_476686.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:XP_006239325.1 Gene:Pax7 / 500574 RGDID:1564360 Length:505 Species:Rattus norvegicus


Alignment Length:465 Identity:139/465 - (29%)
Similarity:184/465 - (39%) Gaps:149/465 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFYETGSIRP 69
            ||..||||||||:||||||:.:|.:||::|..|:|||.|||||.||||||||||.|:.|||||||
  Rat    34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRP 98

  Fly    70 GSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPS--ISSINRILR-- 130
            |:|||||.:|||||.|.|||...|.||.|||:||||::|.:...||.|:|||  :|||:|:||  
  Rat    99 GAIGGSKPRQVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIK 163

  Fly   131 ------------------------------NSGLWTDE-----------MTSSQQNAAAAAAA-- 152
                                          :.|...||           :...|:.:.....|  
  Rat   164 FGKKEDDEEGDKKEEDGEKKAKHSIDGILGDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQ 228

  Fly   153 ------AAAAAH----------------------------------QAGSGPSNGYG----GQAP 173
                  |....|                                  |||:.....:.    |..|
  Rat   229 LEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFP 293

  Fly   174 PPPVTVAPPTPAATPSIARYAKPPALMMNSAGEMPIKPAPKMPPSMGHGHSHGLNPNVSGLDLS- 237
            |..:...||.     .:...|.|...:....|....:|.|..|.:|   |..||....:..|.| 
  Rat   294 PTGMPTLPPY-----QLPDSAYPTTTVSQDGGSTVHRPQPLPPSTM---HQGGLAAAAAAADSSS 350

  Fly   238 -YSALHKHWLWNPSLLYYTQAHIQAQAAASGGQFLPYAGGYLPHAMAAAAASSTSALGGFTKSES 301
             |.|.|....::.|.:         ...|......|.:.|..|..|:.                 
  Rat   351 AYGARHSFSSYSDSFM---------NPGAPSNHMNPVSNGLSPQVMSI----------------- 389

  Fly   302 SIDLSTPGA------AGDALSDCDSGKSSPAALSLTASGGGNGAGSAPEASPGSTLSHSRKRNP- 359
               ||.|.|      |..::|....|..|.:::|.:.|      ..|....||.:|..|:...| 
  Rat   390 ---LSNPSAVPPQPQADFSISPLHGGLDSASSISASCS------QRADSIKPGDSLPTSQSYCPP 445

  Fly   360 ------YSIE 363
                  ||::
  Rat   446 TYSTTGYSVD 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_476686.1 HTH_ARSR 5..133 CDD:481197 85/161 (53%)
Pax7XP_006239325.1 PAX 34..161 CDD:128645 83/126 (66%)
Homeodomain 218..274 CDD:459649 3/55 (5%)
Pax7 <354..385 CDD:403540 6/39 (15%)

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