Protein Alignment Poxn and repo

DIOPT Version :10

• Sequence 1: NP_476686.1
• Gene: Poxn / 36741
• FlyBaseID: FBgn0003130
• Length: 425
• Species: Drosophila melanogaster
• Sequence 2: NP_477026.1
• Gene: repo / 47285
• FlyBaseID: FBgn0011701
• Length: 612
• Species: Drosophila melanogaster
• Alignment Length: 349
• Identity: 70/349 - (20%)
• Similarity: 102/349 - (29%)
• Gaps: 147/349 - (42%)

  Fly   105 REQLQQQRVCDPSSVPSISSINRILRNSGLWTDEMTSSQQNAAAAAAAAAAAAHQAGSGPSNGYG 169
            ::|.||||:.|         .|.||.|.|                          .|...|.|.|
  Fly    50 QQQQQQQRLPD---------CNTILPNGG--------------------------GGGAGSGGAG 79

  Fly   170 GQAPPPPVT---VAPPTPAATPSIA-RYAKPPALMMNSAGEMPIKPAPKMPPSMGHGHSHGLNPN 230
            |.  |..||   ........:||.. .|...|..::....:..            |.|.|
  Fly    80 GS--PNYVTKLDFVNKMGCYSPSQKYEYISAPQKLVEQQQQQQ------------HHHQH----- 125

  Fly   231 VSGLDLSYSALHKHWLWNP-----SLLYYTQAHIQAQ---------------------AAASGGQ 269
                       |:|:...|     .:|.:.|:..|.|                     :::...|
  Fly   126 -----------HQHYTATPPPSHNGILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQ 179

  Fly   270 FLP------YAGGYLPHAMAAAAASSTSALGGFTKSESSIDLSTPGAAGDALSDCD--------- 319
            :.|      |.|.  ||.:......|...|     .:||..:...|:||..|...|
  Fly   180 YEPQQLQHLYGGS--PHHLDHLDHGSDGLL-----QDSSPVMINGGSAGGKLKKPDEMCSQLEAG 237

  Fly   320 -SGKSSPAALSLTASGGGNGAGSAPEAS-----------------------PGSTLSHSRKRNPY 360
             :|.:.|::.|...:|..||.|:|..:|                       .||  |..:|.:|.
  Fly   238 GAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGS--SSKKKGDPN 300

  Fly   361 SIEELLKKPEKRLRLDSNRLECLE 384
            .|    ||.:.|....:.:||.||
  Fly   301 GI----KKKKTRTTFTAYQLEELE 320

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Poxn	NP_476686.1	HTH_ARSR	5..133	CDD:481197	10/27 (37%)
repo	NP_477026.1	Homeodomain	313..361	CDD:459649	4/8 (50%)