DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxn and repo

DIOPT Version :9

Sequence 1:NP_001261016.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_477026.1 Gene:repo / 47285 FlyBaseID:FBgn0011701 Length:612 Species:Drosophila melanogaster


Alignment Length:349 Identity:70/349 - (20%)
Similarity:102/349 - (29%) Gaps:147/349 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 REQLQQQRVCDPSSVPSISSINRILRNSGLWTDEMTSSQQNAAAAAAAAAAAAHQAGSGPSNGYG 169
            ::|.||||:.|         .|.||.|.|                          .|...|.|.|
  Fly    50 QQQQQQQRLPD---------CNTILPNGG--------------------------GGGAGSGGAG 79

  Fly   170 GQAPPPPVT---VAPPTPAATPSIA-RYAKPPALMMNSAGEMPIKPAPKMPPSMGHGHSHGLNPN 230
            |.  |..||   ........:||.. .|...|..::....:..            |.|.|     
  Fly    80 GS--PNYVTKLDFVNKMGCYSPSQKYEYISAPQKLVEQQQQQQ------------HHHQH----- 125

  Fly   231 VSGLDLSYSALHKHWLWNP-----SLLYYTQAHIQAQ---------------------AAASGGQ 269
                       |:|:...|     .:|.:.|:..|.|                     :::...|
  Fly   126 -----------HQHYTATPPPSHNGILLHKQSSQQQQQQQQQLVGILDYHPLNGKLDYSSSPKDQ 179

  Fly   270 FLP------YAGGYLPHAMAAAAASSTSALGGFTKSESSIDLSTPGAAGDALSDCD--------- 319
            :.|      |.|.  ||.:......|...|     .:||..:...|:||..|...|         
  Fly   180 YEPQQLQHLYGGS--PHHLDHLDHGSDGLL-----QDSSPVMINGGSAGGKLKKPDEMCSQLEAG 237

  Fly   320 -SGKSSPAALSLTASGGGNGAGSAPEAS-----------------------PGSTLSHSRKRNPY 360
             :|.:.|::.|...:|..||.|:|..:|                       .||  |..:|.:|.
  Fly   238 GAGVTPPSSSSTVVNGTTNGTGNANSSSSAGVGIQGAAGTAGGVAAPAAKKDGS--SSKKKGDPN 300

  Fly   361 SIEELLKKPEKRLRLDSNRLECLE 384
            .|    ||.:.|....:.:||.||
  Fly   301 GI----KKKKTRTTFTAYQLEELE 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_001261016.1 HTH 5..133 CDD:304362 10/27 (37%)
repoNP_477026.1 Homeobox 313..360 CDD:278475 4/8 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45451028
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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