DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxn and pax6

DIOPT Version :10

Sequence 1:NP_476686.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:XP_031755865.1 Gene:pax6 / 448447 XenbaseID:XB-GENE-484088 Length:469 Species:Xenopus tropicalis


Alignment Length:465 Identity:125/465 - (26%)
Similarity:163/465 - (35%) Gaps:199/465 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 AGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLL--------------VSHGCVSKI 57
            :|||||||||||||||||..|::||:||..|.|||||||.|.              ||:||||||
 Frog    37 SGVNQLGGVFVNGRPLPDSTRQKIVELAHSGARPCDISRILQSHADAKVPVLDSQNVSNGCVSKI 101

  Fly    58 LTRFYETGSIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSI 122
            |.|:||||||||.:|||||.: ||||.||.||.:.|.|...:||||||::|..:.||...::||:
 Frog   102 LGRYYETGSIRPRAIGGSKPR-VATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPSV 165

  Fly   123 SSINRILRNSGLWTDEMTSSQQNAAA------------------------AAAAAAAAAHQAGSG 163
            |||||:|||       :.|.:|...|                        ...:......|.|..
 Frog   166 SSINRVLRN-------LASEKQQMGADGMYDKLRMLNGQTGTWGTRPGWYPGTSVPGQPAQDGCQ 223

  Fly   164 PSNGYGG---------------------------------------------------------- 170
            |..|.||                                                          
 Frog   224 PQEGGGGGENTNSISSNGEDSDEAQMRLQLKRKLQRNRTSFTQEQIEALEKEFERTHYPDVFARE 288

  Fly   171 -----------------------------------QAPPPP----------VTVAPPTPAATPSI 190
                                               ||...|          .:|..|.|..|..:
 Frog   289 RLAAKIDLPEARIQVWFSNRRAKWRREEKLRNQRRQASNTPSHIPISSSFSTSVYQPIPQPTTPV 353

  Fly   191 ARYAKPPAL------MMNSAGEMPIKPA-------PKMPPSMGHGHSHG----LNPNVSGLDLSY 238
            :.:.....|      :.||...:|..|:       |..||......|:.    .:|:|:|  .||
 Frog   354 SSFTSGSMLGRTDTALTNSYSALPPMPSFTMGNNLPMQPPVPSQTSSYSCMLPTSPSVNG--RSY 416

  Fly   239 SALHKHWLWNPSLLYYTQAHIQAQAAASGGQFLPYAGGYLPHAMAAAAASSTSALGGFTKSESSI 303
            ..             ||..|:|.                  |..:....:|.:|..|......|:
 Frog   417 DT-------------YTPPHMQT------------------HMNSQPMGTSGTASTGLISPGVSV 450

  Fly   304 DLSTPGAAGD 313
            .:..||:..|
 Frog   451 PVQVPGSEPD 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_476686.1 HTH_ARSR 5..133 CDD:481197 83/139 (60%)
pax6XP_031755865.1 PAX 35..173 CDD:128645 80/136 (59%)
Homeodomain 259..314 CDD:459649 0/54 (0%)

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