DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxn and Vsx1

DIOPT Version :10

Sequence 1:NP_476686.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_572232.2 Gene:Vsx1 / 31470 FlyBaseID:FBgn0263511 Length:837 Species:Drosophila melanogaster


Alignment Length:260 Identity:67/260 - (25%)
Similarity:92/260 - (35%) Gaps:78/260 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 REQLQQQRVCDPSSVPSISSINRILRNSGLWTDEMTSSQQNAAAAAAAAAAAAH--QAGSGPSN- 166
            ::|.|||:........:|.|    ||.|...:.:::   :.:||||||||||||  .....|:| 
  Fly    65 QQQQQQQQQLQQQQQQAIDS----LRESRSISPDVS---RLSAAAAAAAAAAAHCQLPVFNPANF 122

  Fly   167 ----GYGGQAPPPPVTVAPPTPAATPSIARYAKPPALMMNSAGEMPIKPAPKMPPSM-GHGHSHG 226
                ||...|.|.....|......|.:.|.|.:         |.:|  |....|... ||...| 
  Fly   123 YAAAGYAAAADPGNAAAAHHHHMTTLAAAAYLR---------GFLP--PGFSTPHEFRGHFQQH- 175

  Fly   227 LNPNVSGLDLSYSALHKHWLWNPSLLYYTQAHIQAQAAASGGQFLPYAGGYLPHAMAAAAASSTS 291
                                        ..|....||||.|.::                |||.:
  Fly   176 ----------------------------FGAQFAEQAAARGQEY----------------ASSLA 196

  Fly   292 ALGGFTKSESSIDLSTPGAAGDALSDCDSGKSSPAALSL------TASGGGNGAGSAPEASPGST 350
            ...|..:|.|. :.|:.|..|...|...||..:|.:..|      |||.||:|.|:....|.|.:
  Fly   197 NASGDEQSPSK-NSSSSGNGGSGGSGSGSGGGNPTSNGLGHLGSPTASNGGSGGGAGVGGSGGGS 260

  Fly   351  350
              Fly   261  260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_476686.1 HTH_ARSR 5..133 CDD:481197 8/27 (30%)
Vsx1NP_572232.2 Homeodomain 395..452 CDD:459649
Blue background indicates that the domain is not in the aligned region.

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