DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxn and Pax8

DIOPT Version :9

Sequence 1:NP_001261016.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_035170.1 Gene:Pax8 / 18510 MGIID:97492 Length:457 Species:Mus musculus


Alignment Length:521 Identity:161/521 - (30%)
Similarity:205/521 - (39%) Gaps:195/521 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPH----TGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRF 61
            |||    :|..|:|||||.||||||||:.||:||||||..|||||||||||.||||||||||.|:
Mouse     1 MPHNSIRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRVSHGCVSKILGRY 65

  Fly    62 YETGSIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSIN 126
            |||||||||.|||||.| ||||.||:||...|.:|..|||||||::|..:.|||..:|||:||||
Mouse    66 YETGSIRPGVIGGSKPK-VATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSIN 129

  Fly   127 RILRNSGLWTDEMTSSQQNAAAAAAAAAAAAHQAGSGPSNGYGGQAPPPPVTVAPPTPAATPSIA 191
            ||:|         |..||                               |..:...:..||.|::
Mouse   130 RIIR---------TKVQQ-------------------------------PFNLPMDSCVATKSLS 154

  Fly   192 RYAKPPALMMNSAGEMPIKPAPKMPPSMGHGHSHGL----------NPNVSGLD----------- 235
                |...::.|:...|    |:.|.|...|.::.:          |.|...:|           
Mouse   155 ----PGHTLIPSSAVTP----PESPQSDSLGSTYSINGLLGIAQPGNDNKRKMDDSDQDSCRLSI 211

  Fly   236 ---LSYSALHKHWLWNPSLLYYTQAHIQAQAAASGGQFLPYAGGYLPHAMA-------------- 283
               .|.|...||...:.    ::|.|::|...       |:...:.|.|.|              
Mouse   212 DSQSSSSGPRKHLRTDT----FSQHHLEALEC-------PFERQHYPEAYASPSHTKGEQGLYPL 265

  Fly   284 -----------AAAASSTSALGGFTKSESS----IDLSTPGAAGDALSDCDSGKSSPAALSLTA- 332
                       |...||.:.||....:..:    .|..:|.|......:..|..|:|::||.:| 
Mouse   266 PLLNSALDDGKATLTSSNTPLGRNLSTHQTYPVVADPHSPFAIKQETPELSSSSSTPSSLSSSAF 330

  Fly   333 -------SGGGNGAGSAP-EASP------------------------------------------ 347
                   |||..||...| .|.|                                          
Mouse   331 LDLQQVGSGGPAGASVPPFNAFPHAASVYGQFTGQALLSGREMVGPTLPGYPPHIPTSGQGSYAS 395

  Fly   348 -------------GSTLSHSRKRNPY-SIEELLKKPEKRLRLDSNRLECLESSSCESSQDSPVAP 398
                         |:..||:    || |..|..:.|...|         |.|....||...|.||
Mouse   396 SAIAGMVAGSEYSGNAYSHT----PYSSYSEAWRFPNSSL---------LSSPYYYSSTSRPSAP 447

  Fly   399 P 399
            |
Mouse   448 P 448

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_001261016.1 HTH 5..133 CDD:304362 91/127 (72%)
Pax8NP_035170.1 PAX 9..133 CDD:128645 90/124 (73%)
PAI subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 12..68 45/55 (82%)
RED subdomain. /evidence=ECO:0000255|PROSITE-ProRule:PRU00381 87..135 27/56 (48%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..224 12/68 (18%)
Pax2_C 344..455 CDD:372091 21/118 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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