Protein Alignment Poxn and vab-3

DIOPT Version :10

• Sequence 1: NP_476686.1
• Gene: Poxn / 36741
• FlyBaseID: FBgn0003130
• Length: 425
• Species: Drosophila melanogaster
• Sequence 2: NP_001024570.1
• Gene: vab-3 / 181251
• WormBaseID: WBGene00006870
• Length: 455
• Species: Caenorhabditis elegans
• Alignment Length: 364
• Identity: 122/364 - (33%)
• Similarity: 170/364 - (46%)
• Gaps: 38/364 - (10%)

  Fly     1 MPHTGQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFYETG 65
            |...|..|||||||||||||||||..|:||||||..|.|||||||.|.||:|||||||.|:||:|
 Worm     1 MSDAGHTGVNQLGGVFVNGRPLPDATRQRIVDLAHKGCRPCDISRLLQVSNGCVSKILCRYYESG 65

  Fly    66 SIRPGSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSINRILR 130
            :|||.:|||||.: |||..||:||...|.:...:||||||::|....:|:..::||:|||||:||
 Worm    66 TIRPRAIGGSKPR-VATSDVVEKIEDYKRDQPSIFAWEIRDKLLADNICNNETIPSVSSINRVLR 129

  Fly   131 NSGLWTDEMTSSQQNAAAAAAAAAAAAHQAGSG----PSNGYGGQAPPPPVTVAPPTPAATPSIA 191
            |.....:::|...:.............:.:..|    |.||..|..|..|..:..|.........
 Worm   130 NLAAKKEQVTMQTELYDRIRIVDNFPYNSSWYGQWPIPMNGAVGLNPFVPAPLIEPKTEGEFEKD 194

  Fly   192 RYAKPPALMM-NSAGEMPIKPAPKMPPSMGHGHSHGLNPNVSGLDLSYSALHKHWLWNPSLLYYT 255
            ...|||.... ::|..|.:|      ..:....:......:..|:..:...|           |.
 Worm   195 EDQKPPTEPEDDAAARMRLK------RKLQRNRTSFTQVQIESLEKEFERTH-----------YP 242

  Fly   256 QAHIQAQAAASGGQFLPYAGGYLPHAMAAAAASSTSALGGFTKSESSIDLSTPGAAGDALSDCDS 320
            ....:.:.|..         ..||.|......|:..|  .:.:.|...:..:.|....:||   :
 Worm   243 DVFARERLAQK---------IQLPEARIQVWFSNRRA--KWRREEKMRNKRSSGTMDSSLS---N 293

  Fly   321 GKSSPAALSLTASGGGNGAGSAPEASPGSTLSHSRKRNP 359
            |..:|...|:|.|...|..|| |.::|....|::....|
 Worm   294 GTPTPTPGSVTGSNMTNPIGS-PASTPNRFPSNNSANLP 331

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Poxn	NP_476686.1	HTH_ARSR	5..133	CDD:481197	81/127 (64%)
vab-3	NP_001024570.1	PAX	5..129	CDD:128645	78/124 (63%)
		Homeodomain	219..274	CDD:459649	9/76 (12%)