DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxn and pax5

DIOPT Version :9

Sequence 1:NP_001261016.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:XP_012808654.1 Gene:pax5 / 100493222 XenbaseID:XB-GENE-479876 Length:388 Species:Xenopus tropicalis


Alignment Length:413 Identity:147/413 - (35%)
Similarity:187/413 - (45%) Gaps:144/413 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 GVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFYETGSIRPGSI 72
            |||||||||||||||||.||:|||:||..|||||||||||.||||||||||.|:||||||:||.|
 Frog    18 GVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIKPGVI 82

  Fly    73 GGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSINRILRNSGLWTD 137
            ||||.| ||||.||:||...|.:|..|||||||::|..:||||..:|||:||||||:|       
 Frog    83 GGSKPK-VATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIR------- 139

  Fly   138 EMTSSQQNAAAAAAAAAAAAHQAGSGPSNGYGGQAPPPPVTVAPPTPAATPSIARYAKPPALMMN 202
              |..||                   |:|   .|.||...::     .:|.|:.:.:   ::..:
 Frog   140 --TKVQQ-------------------PTN---QQVPPSNHSI-----VSTGSVTQVS---SVSTD 172

  Fly   203 SAG-----------------------EMPIKPAPKMPPSMGHGHS----HGLNPNVSG------- 233
            |||                       :..|:.:|     :.:|||    ..|...:.|       
 Frog   173 SAGSSYSISGILGITSSNAETNKRKRDEGIQESP-----VPNGHSLPGRDFLRKQMRGDLFTQQQ 232

  Fly   234 ---LDLSYSALHKHWLWNPSLLYYT------------QAHIQAQAAASGGQFLPYAGGYLPHAMA 283
               ||..:...|           ||            |....|.|:.:||         |....:
 Frog   233 LDVLDRVFERQH-----------YTDIFTTTEPIKPEQTEYSAMASLTGG---------LDEMKS 277

  Fly   284 AAAASSTSALGGFTKSESSIDLSTPGAAGDALSDCDSGKSSPAALSLTASG-------GGNGAGS 341
            :..:.|::.:||......|..|.|    |..|:            |.|..|       .|.|:.|
 Frog   278 SLTSPSSADIGGSVPGPQSYPLVT----GRDLA------------STTLPGYPPHVPPAGQGSYS 326

  Fly   342 APEAS---PGSTLSHSRKRNPYS 361
            ||..:   |||..|.|    |||
 Frog   327 APTLTGMVPGSDFSGS----PYS 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_001261016.1 HTH 5..133 CDD:304362 92/124 (74%)
pax5XP_012808654.1 PAX 15..139 CDD:128645 91/121 (75%)
Pax2_C 277..374 CDD:372091 24/89 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002430
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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