DRSC/TRiP Functional Genomics Resources

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Protein Alignment Poxn and pax3b

DIOPT Version :9

Sequence 1:NP_001261016.1 Gene:Poxn / 36741 FlyBaseID:FBgn0003130 Length:425 Species:Drosophila melanogaster
Sequence 2:NP_001315326.1 Gene:pax3b / 100150137 ZFINID:ZDB-GENE-080917-53 Length:469 Species:Danio rerio


Alignment Length:463 Identity:139/463 - (30%)
Similarity:199/463 - (42%) Gaps:114/463 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 GQAGVNQLGGVFVNGRPLPDCVRRRIVDLALCGVRPCDISRQLLVSHGCVSKILTRFYETGSIRP 69
            ||..||||||||:||||||:.:|.:||::|..|:|||.|||||.||||||||||.|:.|||||||
Zfish    34 GQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRP 98

  Fly    70 GSIGGSKTKQVATPTVVKKIIRLKEENSGMFAWEIREQLQQQRVCDPSSVPSISSINRILR-NSG 133
            |:|||:|:| ..:|.|.|::...|.||.|:|:||||::|.::.:||.::||::|||:||:| .||
Zfish    99 GAIGGTKSK-TTSPDVEKRVEEYKRENPGIFSWEIRDKLLKEGICDRNNVPTVSSISRIMRGRSG 162

  Fly   134 LWTDEMTSSQQNAAAAAAAAAAAAHQAG----------SGPSNGYGGQAPPPPVTVAPPTPAATP 188
            ...||....:.............||:..          |.||: .|.:....|            
Zfish   163 TRADEEEEEEDEEDIERREREENAHRGAHSIEGILADRSSPSD-EGSEVESEP------------ 214

  Fly   189 SIARYAKPPALMMNSAGEMPIKPAPKMPPSMGHGHSHGLNPNVSGLDLSYSALHKHWLWNPSLL- 252
                             ::|:|...:      ...:......:..|:.::...|...::....| 
Zfish   215 -----------------DLPLKRKQR------RSRTTFTADQLEELERAFERTHYPDIYTREELA 256

  Fly   253 ---YYTQAHIQA---------QAAASGGQFLPY----AGGYLPHAMAAAAASSTSALGGFTKSES 301
               ..|:|.:|.         :..|...|.:.:    .||:..|||        |:|..:..|||
Zfish   257 QRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFSHHAM--------SSLSPYQLSES 313

  Fly   302 SIDLSTPGAAGDALSDCDSG---KSSPAALSLTASGGGNG---------------AGSAPEASPG 348
            ..    |.||    ...|||   :..|...|...|.||.|               .|.:....|.
Zfish   314 PY----PPAA----LPQDSGTVHRPQPLPHSSHQSSGGAGPEGGASYCLSSRHGYTGYSDAFGPH 370

  Fly   349 STLSHSRKRNPYSIEEL-LKKP-------EKRLRLDSNRLECLESSSC----ESSQDSPVAPPLE 401
            :|.:::...|..|.:.: |..|       :....|||.   ...||||    ||....|....|.
Zfish   371 NTHNNNAINNGLSSQVMGLITPSGASHPTQAEFSLDSG---SSVSSSCSQRMESLSSLPALSNLS 432

  Fly   402 TPEDEDPA 409
            .|:....|
Zfish   433 NPQSYSSA 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PoxnNP_001261016.1 HTH 5..133 CDD:304362 76/128 (59%)
pax3bNP_001315326.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0849
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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