DRSC/TRiP Functional Genomics Resources

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Protein Alignment Zasp52 and lims1

DIOPT Version :10

Sequence 1:NP_001027420.2 Gene:Zasp52 / 36740 FlyBaseID:FBgn0265991 Length:2194 Species:Drosophila melanogaster
Sequence 2:XP_021335295.1 Gene:lims1 / 554019 ZFINID:ZDB-GENE-050522-236 Length:345 Species:Danio rerio


Alignment Length:238 Identity:68/238 - (28%)
Similarity:89/238 - (37%) Gaps:68/238 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  2018 PLCNSCNVQIRGPFITALGRIWCPDHFICVNGNCRRPLQDIGFV--------------------- 2061
            |.|:.|...|.|..|.|:...|.||.|.|  ..|:..|.|:|||                     
Zfish    80 PCCHQCGEFIIGRVIKAMNNSWHPDCFCC--DICQAVLADVGFVKNAGRHLCRPCHNREKARGLG 142

  Fly  2062 ------------------------------------------EEKGDLYCEYCFEKYLAPTCSKC 2084
                                                      |.||:|||..|.:|...|.|..|
Zfish   143 KYICQKCHAIIEEQPLIFKNDPYHPDHFNCSNCGKELTADARELKGELYCLPCHDKMGVPICGAC 207

  Fly  2085 AGKIKGDCLNAIGKHFHPECFTCGQCGKIFGNRPFFLEDGNAYCEADWNELFTTKCFACGFPVEA 2149
            ...|:|..:||:||.:|.|.|.|.:|.|.|.....:...|.||||..:|:||...|:.|...:| 
Zfish   208 RRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDVCYHCNRVIE- 271

  Fly  2150 GDRWVEALNHNYHSQCFNCTFCKQNLE-GQSFYNKGGRPFCKN 2191
            || .|.|||..:...||:|:.|...|. ...|.....:|.||:
Zfish   272 GD-VVSALNKAWCVNCFSCSTCNTKLTLKDRFVEVDLKPVCKH 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Zasp52NP_001027420.2 PDZ_ZASP52-like 8..88 CDD:467281
DUF4749 150..>218 CDD:464948
LIM_ALP_like 282..333 CDD:188746
PHA03247 <762..1006 CDD:223021
LIM1_Enigma_like_1 2020..2073 CDD:188839 23/115 (20%)
LIM 2081..2132 CDD:259829 20/50 (40%)
LIM3_Enigma_like_1 2140..2193 CDD:188845 18/53 (34%)
lims1XP_021335295.1 LIM1_PINCH 21..79 CDD:188717
LIM2_PINCH 82..133 CDD:188718 17/52 (33%)
LIM3_PINCH 146..196 CDD:188719 6/49 (12%)
LIM4_PINCH 202..255 CDD:188720 21/52 (40%)
LIM5_PINCH 263..316 CDD:188721 18/53 (34%)
Blue background indicates that the domain is not in the aligned region.

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