DRSC/TRiP Functional Genomics Resources

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Protein Alignment Zasp52 and Pdlim1

DIOPT Version :9

Sequence 1:NP_001027420.2 Gene:Zasp52 / 36740 FlyBaseID:FBgn0265991 Length:2194 Species:Drosophila melanogaster
Sequence 2:NP_059061.1 Gene:Pdlim1 / 54133 RGDID:68324 Length:327 Species:Rattus norvegicus


Alignment Length:369 Identity:115/369 - (31%)
Similarity:167/369 - (45%) Gaps:86/369 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 PWGFRLQGGTDFAQPLLVQKVNAGSLSEQAGLQPGDAVVKINDVDVFNLRHKDAQDIVVRSGNNF 82
            ||||||.||.||.|||.:.:|..||.:..|.|..||.:..|:..|..::.|.:||:.:....:|.
  Rat    13 PWGFRLVGGKDFEQPLAISRVTPGSKAAIANLCIGDLITAIDGEDTSSMTHLEAQNKIKGCVDNM 77

  Fly    83 VITVQRG-GSTWRPHVTPTGNVPQPNSPYLQTVTKTSLAHKQQDSQHIGCGYNNAARPFSNGGDG 146
            .:||.|. ...|.|.||..|.    ..||     |.:||.:.|:..|||..:|.:|.||:.....
  Rat    78 TLTVSRSEQKIWSPLVTEEGK----RHPY-----KMNLASEPQEVLHIGSAHNRSAMPFTASPAP 133

  Fly   147 GVKSIVNKQYNTPVGIYSDESIA-------ETLSAQAEVL----------AGGVLGVNFKKNEKE 194
            |.:.|.| |||:|.|:||.|:|:       ...||..|..          :||::      .:||
  Rat   134 GTRVITN-QYNSPTGLYSSENISNFNNAVESKTSASGEEANSRPSAQPHPSGGLI------IDKE 191

  Fly   195 YQGDRSEVLKFLREEETGQSTPAFGNSHYEHDAPQQLQQPQQQYN-----QHQQHYHQQQQQQQS 254
                 |||.|.|:|:                   |:|.:|.:|..     |.......:....:.
  Rat   192 -----SEVYKMLQEK-------------------QELNEPPKQSTSFLVLQEILESDGKGDPNKP 232

  Fly   255 STTRHVSAPV--------NSPKPPSTGGLPTGQNICTECERLITGVFVRIKDKNLHVECFKCATC 311
            |..|.|.|||        |:.|.|          ||.:|...|.||||:::|.:.|.||:.|..|
  Rat   233 SGFRSVKAPVTKVAASVGNAQKLP----------ICDKCGTGIVGVFVKLRDHHPHPECYVCTDC 287

  Fly   312 GTSLKNQGYYNFNNKLYCDIHAKQAAINNPPTGTEGYVPVPIKP 355
            |.:||.:|::...:::||:.||::..  .||   |||..|.:.|
  Rat   288 GINLKQKGHFFVGDQIYCEKHARERV--TPP---EGYDVVTVFP 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Zasp52NP_001027420.2 PDZ_signaling 6..87 CDD:238492 27/68 (40%)
DUF4749 150..>217 CDD:292558 24/83 (29%)
LIM_ALP_like 282..333 CDD:188746 19/50 (38%)
LIM1_Enigma_like_1 2020..2073 CDD:188839
LIM 2081..2132 CDD:259829
LIM3_Enigma_like_1 2140..2193 CDD:188845
Pdlim1NP_059061.1 PDZ_signaling 5..81 CDD:238492 26/67 (39%)
DUF4749 136..228 CDD:292558 29/122 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 161..186 4/24 (17%)
LIM_CLP36 258..309 CDD:188832 19/50 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343448
Domainoid 1 1.000 58 1.000 Domainoid score I10512
eggNOG 1 0.900 - - E1_KOG1703
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24214
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.840

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