DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cdk5 and cdk1

DIOPT Version :9

Sequence 1:NP_477080.1 Gene:Cdk5 / 36727 FlyBaseID:FBgn0013762 Length:294 Species:Drosophila melanogaster
Sequence 2:NP_997729.1 Gene:cdk1 / 80973 ZFINID:ZDB-GENE-010320-1 Length:302 Species:Danio rerio


Alignment Length:299 Identity:167/299 - (55%)
Similarity:211/299 - (70%) Gaps:13/299 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQKYDKMEKIGEGTYGTVFKGRNRDTMEIVALKRVRLDEDDEGVPSSALREICLLKELKHKNIVR 65
            |..|.|:|||||||||.|:||||:.|.::||:|::||:.::|||||:|:|||.|||||:|.|:||
Zfish     1 MDDYLKIEKIGEGTYGVVYKGRNKTTGQVVAMKKIRLESEEEGVPSTAVREISLLKELQHPNVVR 65

  Fly    66 LIDVLHSDKKLTLVFEHCDQDLKKYFDSL-NGE-IDMAVCRSFMLQLLRGLAFCHSHNVLHRDLK 128
            |:|||..:.||.||||....|||||.||: :|| :|..:.:|::.|:|.|:.|||...|||||||
Zfish    66 LLDVLMQESKLYLVFEFLSMDLKKYLDSIPSGEFMDPMLVKSYLYQILEGILFCHCRRVLHRDLK 130

  Fly   129 PQNLLINKNGELKLADFGLARAFGIPVKCYSAEVVTLWYRPPDVLFGAKLYTTSIDMWSAGCILA 193
            ||||||:..|.:||||||||||||:||:.|:.||||||||.|:||.||..|:|.:|:||.|.|.|
Zfish   131 PQNLLIDNKGVIKLADFGLARAFGVPVRVYTHEVVTLWYRAPEVLLGASRYSTPVDLWSIGTIFA 195

  Fly   194 ELADAGRPLFPGSDVLDQLMKIFRVLGTPNEDSWPGVSHLSDYVALPSFPAITSW-----SQLVP 253
            ||| ..:|||.|...:|||.:|||.|||||.:.||.|..|.||  ..:||   .|     :..|.
Zfish   196 ELA-TKKPLFHGDSEIDQLFRIFRTLGTPNNEVWPDVESLPDY--KNTFP---KWKSGNLANTVK 254

  Fly   254 RLNSKGRDLLQKLLICRPNQRISAEAAMQHPYFTDSSSS 292
            .|:..|.|||.|:||..|.:||||..||.||||.|...|
Zfish   255 NLDKNGIDLLMKMLIYDPPKRISARQAMTHPYFDDLDKS 293

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cdk5NP_477080.1 PLN00009 1..288 CDD:177649 165/293 (56%)
STKc_CDK5 3..286 CDD:143344 162/289 (56%)
cdk1NP_997729.1 PLN00009 1..290 CDD:177649 165/294 (56%)
STKc_CDK1_euk 3..287 CDD:270845 162/289 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1010560at2759
OrthoFinder 1 1.000 - - FOG0000411
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100334
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R185
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.850

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