DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgant1 and galntl6

DIOPT Version :9

Sequence 1:NP_611043.1 Gene:Pgant1 / 36717 FlyBaseID:FBgn0034025 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001139074.1 Gene:galntl6 / 568915 ZFINID:ZDB-GENE-090312-115 Length:600 Species:Danio rerio


Alignment Length:547 Identity:197/547 - (36%)
Similarity:287/547 - (52%) Gaps:54/547 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 YEQIIQLDLQKQKVGLGEQGVAVHLSGAAKERGDEIYKKIALNEELSEQLTYNRSVGDHRNPLCA 139
            ||.|.:   ..|:||.||.|....|  ...|..|.:||:...|..:|..:..:||:.|.|:|.| 
Zfish    71 YESIRK---DGQRVGKGEHGKPYPL--VEDECDDSVYKENGFNIYVSNNIALDRSLPDIRHPNC- 129

  Fly   140 KQRFDSDSLPTASVVIIFFNEPYSVLLRTVHSTLSTCNEKALKEIILVDDGSDNVELGAKLDYYV 204
            ||:...::||..|::|.|.||.:|.||||:||..:...:..:.|||||||.||...|.|.|..|:
Zfish   130 KQKLYLENLPNTSIIIPFHNEGWSSLLRTLHSISNRTPDHLIAEIILVDDYSDREHLKAHLAEYM 194

  Fly   205 RTRIPSGKVTILRLKNRLGLIRARLAGARIATGDVLIFLDAHCEGNIGWCEPLLQRIKESRTSVL 269
             :|.|  ||.|:|.|.|.||||.||.||.:|.|:||.|||:|||.||.|..|||.:|.::..:::
Zfish   195 -SRFP--KVRIVRTKKREGLIRTRLLGASVARGEVLTFLDSHCEANINWLPPLLDQIAQNPKTIV 256

  Fly   270 VPIIDVIDANDFQYSTNGYKSFQVGGFQWNGHFDWINLPEREKQRQRRECKQEREICPAYSPTMA 334
            .|:|||||.|.|.|......:.: |.|.|..::..|.:|.        |.:......|..||.||
Zfish   257 CPMIDVIDHNHFGYEAQAGDAMR-GAFDWEMYYKRIPIPP--------ELQGPDPSDPYQSPVMA 312

  Fly   335 GGLFAIDRRYFWEVGSYDEQMDGWGGENLEMSFRIWQCGGTIETIPCSRVGHIFRDFHPYKFPND 399
            |||||::|::|||:|.||..::.||||..|:||::|.|||::..:||||||||:|.:.|||.|:.
Zfish   313 GGLFAVNRQWFWELGGYDTGLEIWGGEQFEISFKVWMCGGSMYDVPCSRVGHIYRKYVPYKVPSG 377

  Fly   400 RDTHGINTARMALVWMDEYINIFFLNRPDLKFHADIGDVTHRVMLRKKLRCKSFEWYLKNI---Y 461
            ... ..|..|:|..|||||....:..||:.: |...||:|.:..|||.|:||.|:||:..:   .
Zfish   378 TSL-ARNLKRVAETWMDEYTEYIYQRRPEYR-HLSTGDLTAQKELRKHLKCKDFKWYMNTVAWDL 440

  Fly   462 PEKFVPTKDV-QGWGKVHAVNSNICLDDLLQNNEKPYNAGLYPCGK-----VLQKSQLFSF---- 516
            |:.:.|.:.: ..||::....|.:|:|.  ::........|..|.|     .....|:|:|    
Zfish   441 PKYYPPVEPLPAAWGEIRNAASGLCVDS--KHGSTGTELRLDNCLKEGAERTWAHEQIFTFGWRE 503

  Fly   517 --TNTNVLRNELSCATVQHSESPPYRVVMVPCMENDEFNEQWRYEHQ----HIIHSNTGMCLDHQ 575
              ...:.|.....|.......||   :.:..| ...:.|:.|.|...    |::.|.   |:|  
Zfish   504 DIRPGDPLHTRKFCFDAISQNSP---ITLYDC-HGMKGNQHWSYRKDKSLYHLVSSG---CMD-- 559

  Fly   576 GLKSLDDAQV--APCDPHSESQRWTIE 600
              .|.:|.::  ..|||.||:|:|..:
Zfish   560 --CSPNDKRIFMNKCDPKSETQQWIFQ 584

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant1NP_611043.1 WcaA 147..426 CDD:223539 124/278 (45%)
pp-GalNAc-T 152..461 CDD:133004 137/311 (44%)
Ricin_B_lectin 474..597 CDD:279046 31/139 (22%)
RICIN 481..599 CDD:238092 30/134 (22%)
galntl6NP_001139074.1 pp-GalNAc-T 142..437 CDD:133004 137/308 (44%)
Glyco_tranf_2_2 142..404 CDD:287123 122/274 (45%)
Ricin_B_lectin 453..581 CDD:279046 31/140 (22%)
RICIN 455..583 CDD:238092 31/140 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3736
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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