DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgant1 and Galnt16

DIOPT Version :9

Sequence 1:NP_611043.1 Gene:Pgant1 / 36717 FlyBaseID:FBgn0034025 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001094333.1 Gene:Galnt16 / 362760 RGDID:1310202 Length:558 Species:Rattus norvegicus


Alignment Length:567 Identity:215/567 - (37%)
Similarity:302/567 - (53%) Gaps:56/567 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 AAALRGHGRERFEAYSDSENE---IARPATQSPYEQIIQLDLQKQKVGLGEQGVAVHLSGAAKER 106
            ||:..|.|.:|.....:...|   |....|.:|.:            |..|:   .:||....:.
  Rat    32 AASSGGRGAQRAGGRPEQLREDRTIPLIVTGTPSK------------GFDEK---AYLSAKQLKP 81

  Fly   107 GDEIYKKIALNEELSEQLTYNRSVGDHRNPLCAKQRFDSDSLPTASVVIIFFNEPYSVLLRTVHS 171
            |::.|::.|.|:..|::|:.:|.:.|.|:..|....:.|| ||..||:|.|.||..|.|||||.|
  Rat    82 GEDPYRQHAFNQLESDKLSPDRPIRDTRHYSCPSLSYSSD-LPATSVIITFHNEARSTLLRTVKS 145

  Fly   172 TLSTCNEKALKEIILVDDGSDNVELGAKLDYYVRTRIPSGKVTILRLKNRLGLIRARLAGARIAT 236
            .|:......::|||||||.|.:.|     |..:.||||  ||..||...|.||||:|:.||.:|.
  Rat   146 VLNRTPAGLIQEIILVDDFSSDPE-----DCLLLTRIP--KVKCLRNDKREGLIRSRVRGADVAG 203

  Fly   237 GDVLIFLDAHCEGNIGWCEPLLQRIKESRTSVLVPIIDVIDANDFQYSTNGYKSFQV-GGFQWNG 300
            ..||.|||:|||.|:.|.:|:|||:.|..|.|:.||||||..::|.|..   .|..: |||.|:.
  Rat   204 ASVLTFLDSHCEVNVEWLQPMLQRVMEDHTRVVSPIIDVISLDNFAYLA---ASADLRGGFDWSL 265

  Fly   301 HFDWINLPEREKQRQRRECKQEREICPAYSPTMAGGLFAIDRRYFWEVGSYDEQMDGWGGENLEM 365
            ||.|..:|..:|..:....|      |..:|.:|||:|.||:.:|..:|.||.|||.|||||.|:
  Rat   266 HFKWEQIPLEQKMTRTDPTK------PIRTPVIAGGIFVIDKSWFNHLGKYDAQMDIWGGENFEL 324

  Fly   366 SFRIWQCGGTIETIPCSRVGHIFRDFHPYKFPNDRD-THGINTARMALVWMDEYINIFFLNRPDL 429
            |||:|.|||::|.:|||||||:||..|||.||.... |:..||.|.|.||||||...::..||..
  Rat   325 SFRVWMCGGSLEIVPCSRVGHVFRKRHPYNFPEGNALTYIRNTKRTAEVWMDEYKQYYYEARPSA 389

  Fly   430 KFHADIGDVTHRVMLRKKLRCKSFEWYLKNIYPEKFVPTKDVQGWGKVHAVNSNICLDDLLQNNE 494
            ...| .|.|..|:..|||:.||||.|||:|:|||..||.|:|........||   ||:...||..
  Rat   390 IGKA-FGSVATRIEQRKKMDCKSFRWYLENVYPELTVPVKEVLPGVIKQGVN---CLESQGQNTA 450

  Fly   495 KPYNAGLYPC---GKVLQKSQLFSFTNTNVLRNELSC--ATVQHSESPPYRVVMVPCMENDEFNE 554
            .....|:..|   .|....:|.:.|:: ::::.:..|  ||.....||...||:..| ...|..:
  Rat   451 GDLLLGMGICRGSAKSPPPAQAWLFSD-HLIQQQGKCLAATSTLMSSPGSPVVLQSC-NPKEGKQ 513

  Fly   555 QWRYEHQHIIHSNTGMCLDHQGLKSLDDAQVA--PCDPHSESQRWTI 599
            :||.:...|.||.:|:||:.:      .||:.  .|...:::|:|.:
  Rat   514 KWRRKGSFIQHSVSGLCLETK------PAQLVTNKCQADAQAQQWQL 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant1NP_611043.1 WcaA 147..426 CDD:223539 133/280 (48%)
pp-GalNAc-T 152..461 CDD:133004 148/310 (48%)
Ricin_B_lectin 474..597 CDD:279046 32/129 (25%)
RICIN 481..599 CDD:238092 32/124 (26%)
Galnt16NP_001094333.1 pp-GalNAc-T 126..420 CDD:133004 148/310 (48%)
WcaA 126..>222 CDD:223539 51/102 (50%)
Ricin_B_lectin 441..543 CDD:279046 28/109 (26%)
RICIN 441..543 CDD:238092 28/109 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3736
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D606683at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.