DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgant1 and Pgant9

DIOPT Version :9

Sequence 1:NP_611043.1 Gene:Pgant1 / 36717 FlyBaseID:FBgn0034025 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001097342.1 Gene:Pgant9 / 246627 FlyBaseID:FBgn0050463 Length:650 Species:Drosophila melanogaster


Alignment Length:600 Identity:219/600 - (36%)
Similarity:302/600 - (50%) Gaps:74/600 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 QNGSPEEPPVAPLV-------RAAALRGHGRE--RFEAYSDSENEIARPAT--QSPYEQIIQLDL 83
            |..:.:|..:.|.|       :|..:|....|  :.:...||:..|..||.  ::|         
  Fly    91 QKQAHDEADIPPTVGKHKADLQAERMRKKAAEQPKKKPQEDSKKVIDPPANFEENP--------- 146

  Fly    84 QKQKVGLGEQGVAVHLSGAAKERGDEIYK-------KIALNEELSEQLTYNRSVGDHRNPLCAKQ 141
                   ||.|..|.|   .||..||:.|       |.|.|:.:|:.::.:|::.|.|:..|..:
  Fly   147 -------GELGKPVRL---PKEMSDEMKKAVDDGWTKNAFNQYVSDLISVHRTLPDPRDAWCKDE 201

  Fly   142 RFDSDSLPTASVVIIFFNEPYSVLLRTVHSTLSTCNEKALKEIILVDDGSDNVELGAKL-DYYVR 205
            .....:||...|:|.|.||.::||||||||.|....|..:.:||||||.||...|..:| ||:  
  Fly   202 ARYLTNLPKTDVIICFHNEAWTVLLRTVHSVLDRSPEHLIGKIILVDDYSDMPHLKRQLEDYF-- 264

  Fly   206 TRIPSGKVTILRLKNRLGLIRARLAGARIATGDVLIFLDAHCEGNIGWCEPLLQRIKESRTSVLV 270
            ...|  ||.|:|.:.|.||||||:.||..|...||.:||:|||...||.||||.||..:.|:|:.
  Fly   265 AAYP--KVQIIRGQKREGLIRARILGANHAKSPVLTYLDSHCECTEGWLEPLLDRIARNSTTVVC 327

  Fly   271 PIIDVIDANDFQYSTNGYKSFQVGGFQWNGHFDWINLPEREKQRQRRECKQEREICPAYSPTMAG 335
            |:||||.....:|.........||||.||..|.|..:||||::|.....:      |.|||||||
  Fly   328 PVIDVISDETLEYHYRDSGGVNVGGFDWNLQFSWHPVPERERKRHNSTAE------PVYSPTMAG 386

  Fly   336 GLFAIDRRYFWEVGSYDEQMDGWGGENLEMSFRIWQCGGTIETIPCSRVGHIFRDFHPYKFPNDR 400
            |||:|||.:|..:|:||...|.|||||||:||:.|.||||:|.:|||.||||||...|||:.:..
  Fly   387 GLFSIDREFFDRLGTYDSGFDIWGGENLELSFKTWMCGGTLEIVPCSHVGHIFRKRSPYKWRSGV 451

  Fly   401 DTHGINTARMALVWMDEYINIFFLNRPDLKFHADIGDVTHRVMLRKKLRCKSFEWYLKNIYPEKF 465
            :....|:.|:|.||||||...::....:.|  .|.|||:.|..||..|:||||:|||.|||||.|
  Fly   452 NVLKKNSVRLAEVWMDEYSQYYYHRIGNDK--GDWGDVSDRRKLRNDLKCKSFKWYLDNIYPELF 514

  Fly   466 VPTKDVQ-------GWGKVHAVNSNICLDDLLQNNEKPYNAGLYPCGKVLQKSQLFSFTNTNVLR 523
            :|...|.       |:|      ...|||.......:....|.|||.: ...:|.:..:....:|
  Fly   515 IPGDSVAHGEIRNLGYG------GRTCLDAPAGKKHQKKAVGTYPCHR-QGGNQYWMLSKAGEIR 572

  Fly   524 NELSCATVQHSESPPYRVVMVPCMENDEFNEQWRYEH--QHIIHSNTGMCLDHQGLKSLDDAQVA 586
            .:.||......:     |.:..| ...:.|:.|.|..  :.:.|..:|.||...  :|.|...:.
  Fly   573 RDDSCLDYAGKD-----VTLFGC-HGGKGNQFWTYRENTKQLHHGTSGKCLAIS--ESKDKLLME 629

  Fly   587 PCDPHSESQRWTIEH 601
            .|......|:||:|:
  Fly   630 ECSASLSRQQWTLEN 644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant1NP_611043.1 WcaA 147..426 CDD:223539 135/279 (48%)
pp-GalNAc-T 152..461 CDD:133004 150/309 (49%)
Ricin_B_lectin 474..597 CDD:279046 25/124 (20%)
RICIN 481..599 CDD:238092 25/119 (21%)
Pgant9NP_001097342.1 WcaA 207..>478 CDD:223539 135/280 (48%)
pp-GalNAc-T 213..510 CDD:133004 150/308 (49%)
Ricin_B_lectin 521..640 CDD:279046 26/133 (20%)
RICIN 523..642 CDD:238092 27/133 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3736
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.721928 Normalized mean entropy S3838
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D60373at6656
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11675
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.870

Return to query results.
Submit another query.