DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgant1 and gly-6

DIOPT Version :9

Sequence 1:NP_611043.1 Gene:Pgant1 / 36717 FlyBaseID:FBgn0034025 Length:601 Species:Drosophila melanogaster
Sequence 2:NP_001022644.1 Gene:gly-6 / 175558 WormBaseID:WBGene00001631 Length:618 Species:Caenorhabditis elegans


Alignment Length:574 Identity:215/574 - (37%)
Similarity:312/574 - (54%) Gaps:51/574 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 SENEIARPATQSPYEQII-------------QLDLQKQKVGL-------GEQGVAV-HLSGAAKE 105
            |..:..:|..:|.|..::             .|..::....|       ||.|..| ||:...::
 Worm    50 STQKAIKPIARSNYHVVVGHYNGNLPEDKKRNLTSEELNANLYAPHDDWGEGGAGVSHLTPEQQK 114

  Fly   106 RGDEIYKKIALNEELSEQLTYNRSVGDHRNPLCAKQRFDSDSLPTASVVIIFFNEPYSVLLRTVH 170
            ..|..:.....|..:|:.::..||:.:.|.|.|....: .|:|||.||:|::.||.||.|||||.
 Worm   115 LADSTFAVNQFNLLVSDGISVRRSLPEIRKPSCRNMTY-PDNLPTTSVIIVYHNEAYSTLLRTVW 178

  Fly   171 STLSTCNEKALKEIILVDDGSDNVELG-AKLDYYVRTRIPSGKVTILRLKNRLGLIRARLAGARI 234
            |.:....::.|||||||||.||...|. ..||..::. :|: .:.|:|.|.|:||||||:.||:.
 Worm   179 SVIDRSPKELLKEIILVDDFSDREFLRYPTLDTTLKP-LPT-DIKIIRSKERVGLIRARMMGAQE 241

  Fly   235 ATGDVLIFLDAHCEGNIGWCEPLLQRIKESRTSVLVPIIDVIDANDFQYSTNGYKSFQVGGFQWN 299
            |.||||.|||:|||...||.||||.|||.:|.:|..|:||:|:.|.|||. .|.:.|: |||.||
 Worm   242 AQGDVLTFLDSHCECTKGWLEPLLTRIKLNRKAVPCPVIDIINDNTFQYQ-KGIEMFR-GGFNWN 304

  Fly   300 GHFDWINLPEREKQRQRRECKQEREICPAYSPTMAGGLFAIDRRYFWEVGSYDEQMDGWGGENLE 364
            ..|.|..:|....::...:     ...|..|||||||||:|:|.||.|:|.||..||.|||||||
 Worm   305 LQFRWYGMPTAMAKQHLLD-----PTGPIESPTMAGGLFSINRNYFEELGEYDPGMDIWGGENLE 364

  Fly   365 MSFRIWQCGGTIETIPCSRVGHIFRDFHPYKFPNDRDTHGINT--ARMALVWMDEYINIFFLNRP 427
            ||||||||||.:|.:|||.|||:||...|:.||.......:||  .|:|.||||::.:.|:...|
 Worm   365 MSFRIWQCGGRVEILPCSHVGHVFRKSSPHDFPGKSSGKVLNTNLLRVAEVWMDDWKHYFYKIAP 429

  Fly   428 DLKFHADIGDVTHRVMLRKKLRCKSFEWYLKNIYPEKFVPTKDVQGWGKV-HAVNSNICLDDLLQ 491
            .........||:.||.|||||.||||:|||:|::.:.|:|| .:..:|:: .:.||::||...|:
 Worm   430 QAHRMRSSIDVSERVELRKKLNCKSFKWYLQNVFQDHFLPT-PLDRFGRMTSSSNSSVCLAWTLR 493

  Fly   492 NNEKPYNAGLYPCGKVLQKSQLFSFTNTNVLRNE----LSCATVQHSESPPYRVVMVPCMENDEF 552
            ::... .|....|.|:..|:||:.:|....:|.:    ||...:.|:.| .:::.:..|...|  
 Worm   494 SSGIK-TASTADCLKIFHKTQLWLYTGDRRIRTDEHLCLSVVQLLHTTS-DWKIQLKECAGFD-- 554

  Fly   553 NEQWRYEHQ--HIIHSNTGMCLDHQGL-----KSLDDAQVAPCDPHSESQRWTI 599
            .|.|.::.:  ...:..||:||....:     ...:...|..|...::.|.|||
 Worm   555 TEYWDFKPKIGRFQNRKTGLCLASPDIFDPTKDEFNPPIVQKCRSSNDRQNWTI 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgant1NP_611043.1 WcaA 147..426 CDD:223539 141/281 (50%)
pp-GalNAc-T 152..461 CDD:133004 156/311 (50%)
Ricin_B_lectin 474..597 CDD:279046 29/134 (22%)
RICIN 481..599 CDD:238092 29/128 (23%)
gly-6NP_001022644.1 WcaA 155..451 CDD:223539 150/304 (49%)
pp-GalNAc-T 160..463 CDD:133004 156/311 (50%)
Ricin_B_lectin 474..606 CDD:279046 29/135 (21%)
RICIN 476..608 CDD:238092 30/135 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D606683at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11675
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.020

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