DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir52d and glr-3

DIOPT Version :9

Sequence 1:NP_611042.2 Gene:Ir52d / 36716 FlyBaseID:FBgn0050464 Length:594 Species:Drosophila melanogaster
Sequence 2:NP_492017.3 Gene:glr-3 / 172449 WormBaseID:WBGene00001614 Length:836 Species:Caenorhabditis elegans


Alignment Length:485 Identity:85/485 - (17%)
Similarity:169/485 - (34%) Gaps:138/485 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 MQGALLKSITFNLIPGSMAYRDPKTGQEKHIGYVANLLNNFVEKVNATLDMQ-VKLHKAGKKTSF 244
            ::|..||...:...|..|.     |....:.||..:||:.....:..|..:| |:.:..|.|.| 
 Worm   398 LEGKHLKISVYLEAPFVMI-----TSNGSYEGYCIDLLHKIANILKFTYTIQKVRDNAYGSKES- 456

  Fly   245 YNITKWA---------SEDL--VDIGMSYAAYFEMTNFDTISYPYLMTSTCFMVPLPDMMPNSEI 298
              ..||:         ..||  ..:.:||.. .|:.:| |:.|.:|..|..|..|   .:.:|: 
 Worm   457 --NGKWSGMVGELQRGDADLAVASLTISYGR-SEVIDF-TVPYMHLGISILFKKP---RIRDSD- 513

  Fly   299 YMGIVDP---PVLVVLIAIFCIFSVMLNYIKQRS---------------------------WRSL 333
            :...:||   .|.::..|.:.:.||.:..|.:.|                           |.::
 Worm   514 WFKFMDPLSTQVWIMTFASYFVVSVAIWIIAKISPYEQFERDEDNGQYKPVDNQFSLRNSFWFTV 578

  Fly   334 SLVNVLLNDICLRGFLAQPFPFPRQSNRKLKLISMLVCFFSVITTTMYTSYLQSFMWGPPIDPKM 398
            ..:....:::|           ||.::  .:|::.:..||::|..:.||:.|.:.          
 Worm   579 CSLMQQGSELC-----------PRAAS--TRLLTGIWWFFALILISSYTANLAAV---------- 620

  Fly   399 CSFADLENSRYKLAIRRYDIEMLRPFNVSMDHVVVF---DESSQLEYLRDSFDDNY--MYPMSAL 458
                        |..||.:..:....:::....:.:   ...|.:.:..:|..:.|  |:.:.:.
 Worm   621 ------------LTTRRMETPIENADDLAAQTKIKYGTLGRGSTMSFFNESKIETYERMWQLMSS 673

  Fly   459 SWSAFKEQQK--------------LFAFPLFYYSEKLC-------LKPISFFSFPIRRHLPYRDL 502
            |...|.:..|              :.:..|.|..|:.|       |.....:...:.:..|||:|
 Worm   674 SPGLFVQSSKEGIARVKSSDYAYLMESSMLEYAVERDCELMQIGGLIDQKGYGIGLPKGSPYREL 738

  Fly   503 FEEHMLQQNEFGLST-----YWIDRSFSDMVRLKLATMNDFSPPRLEDYIEVSDLSWVFGMYFTG 562
            ....:|:..|....|     :|.|:|..            ...|:.:|..:...:..:|.:...|
 Worm   739 ISTAILRLQEKTELTELKEKWWKDKSVV------------CEQPKRKDQDDGESIGGIFIILVVG 791

  Fly   563 LGISCCCFGLELLGL----PSWTRRLRLTN 588
            |.::......||:..    |:.::.:|..|
 Worm   792 LVLTAVLVIFELITTRKPSPAQSQVIRHVN 821

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir52dNP_611042.2 None
glr-3NP_492017.3 PBP1_iGluR_non_NMDA-like 21..385 CDD:380591
Periplasmic_Binding_Protein_Type_2 401..761 CDD:419667 71/408 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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