DRSC/TRiP Functional Genomics Resources

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Protein Alignment SRPK and Srpk3

DIOPT Version :9

Sequence 1:NP_001369087.1 Gene:SRPK / 36706 FlyBaseID:FBgn0286813 Length:1009 Species:Drosophila melanogaster
Sequence 2:XP_006229620.1 Gene:Srpk3 / 293854 RGDID:727856 Length:593 Species:Rattus norvegicus


Alignment Length:697 Identity:304/697 - (43%)
Similarity:393/697 - (56%) Gaps:136/697 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 SKATATATASTSSGGSAGTPDQYQPPKKTQAKAKPNTQKEHQQQPPRSSSNESYESETFSDNEDQ 146
            ::|....|..::|.|.:|..|.......:|....|  :....:..|.:.:....:....||:|:|
  Rat    16 TRALGCDTRMSASAGGSGGMDCGGSSSSSQTSCGP--ESSSSELAPATPAPRLLQGLLGSDDEEQ 78

  Fly   147 ELMEDYCKGGYHPVNIGDLFHDRYHVIRKLGWGHFSTVWLCWDLQAMGYVAIKIVKSAPHFAETA 211
            |..:|||||||:||.|||||:.||||:||||||||||||||||:|...:||:|:||||.|:.|||
  Rat    79 EDPKDYCKGGYYPVKIGDLFNGRYHVVRKLGWGHFSTVWLCWDIQRKRFVALKVVKSAGHYTETA 143

  Fly   212 RDEIKILKTVRETDPSNPRRHKTVQMLDDFKITGVNGTH--ICMVFEVLGDNLLKLIRKSNYRGI 274
            .||||:||.||::|||:|:|...||::|||:|:||||..  :|||.||||..|||.|.||||:|:
  Rat   144 VDEIKLLKCVRDSDPSDPKRETIVQLIDDFRISGVNGVRPDVCMVLEVLGHQLLKWIIKSNYQGL 208

  Fly   275 PLANVKTITRQVLEGLDYLHTCCKIIHTDIKPENVLLCVDEPHVRSLATEATQLYCMNSKMYP-- 337
            |:..||:|.||||.|||||||.||||||||||||:||||.:.::|.||.|||:  ...|...|  
  Rat   209 PVPCVKSIVRQVLHGLDYLHTKCKIIHTDIKPENILLCVGDAYIRRLAAEATE--WQQSGAQPPS 271

  Fly   338 -SLVSRAPKEYREPPITGKMSKNRKKKLKKKAKKRMELFKQQ-RDYLEQADGQGAINPNEVQNGD 400
             |.||.||:|..:   |||:|||::||:::|.|::..|.::: ||.                   
  Rat   272 RSTVSTAPQEVLQ---TGKLSKNKRKKMRRKRKQQKRLLEERLRDL------------------- 314

  Fly   401 AGISDADEYFDANSVEDNVHVAAGQPSRKQREERKAPPEQSEEAQEQDPLTEGTDKAKKKKKKKN 465
                                                   |..||.|....||             
  Rat   315 ---------------------------------------QRLEAMEAAVQTE------------- 327

  Fly   466 KNKSNQSKGQQPPQLENSTSSAESSSALKSQQANGSNSTTNNKSNTNSSGTLKGQSNGKKMP--- 527
                                  :|||.|  :|.:||.|:    |..:..||..|.|.....|   
  Rat   328 ----------------------DSSSRL--EQGSGSTSS----SGCHPEGTRAGPSPASSSPVPT 364

  Fly   528 -----LRPKQEKQGSNHQLNNNNS-KPNSNSDSKISSGSVENTSSATNGPHSNSTLPTPPPPPQA 586
                 |.|..:..|.:..|.:..| ...|.|.::..:|.:.:.|:    |...|.|...|..||.
  Rat   365 GGERSLSPSSQTSGFSGSLFSTASCSVLSGSSNQRETGGLLSPST----PFGASNLLVNPLEPQN 425

  Fly   587 KHKAKKDPALDECNVHVKIADLGNACWVDRHFTEDIQTRQYRSLEVIIGAGYNTSADIWSTACMV 651
            ..|.|           :|||||||||||.:||||||||||||::||:|||.|...|||||||||.
  Rat   426 ADKIK-----------IKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMA 479

  Fly   652 FELATGDYLFEPHSGESYTRDEDHLAHIIELLGPIPREILLNGTYAAKSFTRSCELRNISGLKPW 716
            ||||||||||||||||.|:|||||:|||:||||.||....|:|.|:.:.|.|..|||:|..||.|
  Rat   480 FELATGDYLFEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHW 544

  Fly   717 GLMDVLLEKYEWSQKDAASFASFLTPMLEFDPNKRATAAECLQHPWL 763
            ||.:||:|||||..:.|..|::||.||:|:.|.|||:||:|||||||
  Rat   545 GLYEVLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWL 591

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SRPKNP_001369087.1 PKc_like 159..>318 CDD:419665 109/160 (68%)
PKc_like <600..763 CDD:419665 108/162 (67%)
Srpk3XP_006229620.1 PKc_like 91..591 CDD:304357 281/618 (45%)
S_TKc 102..591 CDD:214567 273/607 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 243 1.000 Domainoid score I2139
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 544 1.000 Inparanoid score I1116
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D290680at2759
OrthoFinder 1 1.000 - - FOG0000847
OrthoInspector 1 1.000 - - otm45168
orthoMCL 1 0.900 - - OOG6_100556
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X594
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.870

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