DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pms2 and MLH3

DIOPT Version :9

Sequence 1:NP_477023.1 Gene:Pms2 / 36705 FlyBaseID:FBgn0011660 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_001328252.1 Gene:MLH3 / 829704 AraportID:AT4G35520 Length:1180 Species:Arabidopsis thaliana


Alignment Length:1245 Identity:249/1245 - (20%)
Similarity:403/1245 - (32%) Gaps:488/1245 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 IKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQ--SVEVSDNGSGVEE 89
            ||.:.:...|.:.||.::..:|..|:|||.||:|||||.|.|.:   |:.  ||:|.|:||||..
plant     4 IKPLPEGVRHSMRSGIIMFDMARVVEELVFNSLDAGATKVSIFV---GVVSCSVKVVDDGSGVSR 65

  Fly    90 MNLEGMTAKYHTSKIREFVDL-LGVETFGFRGEALSSLCALSDMVIQTRHKSTDVGVKVELDHEG 153
            .:|..:..:|.|||..:|.:: ...||||||||||:|:..:|.:.::|:......|.:       
plant    66 DDLVLLGERYATSKFHDFTNVETASETFGFRGEALASISDISLLEVRTKAIGRPNGYR------- 123

  Fly   154 RIKKRSPCAR-GV-------GTTVLLANLFSTLPVRRRDFTRNIKK--EFTKMCQILQAYCLVTK 208
            ::.|.|.|.. |:       ||||.:.:||.:.||||:....:.||  |..|.|....|.     
plant   124 KVMKGSKCLHLGIDDDRKDSGTTVTVRDLFYSQPVRRKYMQSSPKKVLESIKKCVFRIAL----- 183

  Fly   209 GVRILCSNHTPKGAKTIVLQTHGDQEVMANISAIFGARQAADLVPLKSPFGQGQLTEAELRADLE 273
                                      |.:|:|  |..                        .|:|
plant   184 --------------------------VHSNVS--FSV------------------------LDIE 196

  Fly   274 SGADLADTTSPQIS----------TEDVE---RLNQAD--FQLEGFISSCRHGAGRSSRDRQFFF 323
            |..:|.. |:|..|          ||.|.   ::|..|  ..:.|::|    |.|.|.:..|:.:
plant   197 SDEELFQ-TNPSSSAFSLLMRDAGTEAVNSLCKVNVTDGMLNVSGYVS----GPGDSLKALQYIY 256

  Fly   324 VNSRPCDPKNIAKVMN------------------EVYHRYNVQQQPFIYLNIITARSDVDVNLTP 370
            :|||......|.|::|                  :...|..:|..|...|.|...|...:.:..|
plant   257 INSRFISKGPIHKLLNNLATSFECADDWKPTDGQQTGRRNRLQSNPGYILCIACPRRLYEFSFEP 321

  Fly   371 DKRQ--------LLINNERILLLALKKS-LLDTF----------------------------GQT 398
            .|..        :|...|||.|...||. :|:.|                            ...
plant   322 SKTHVEFKKWGPVLAFIERITLANWKKDRILELFDGGADILAKGDRQDLIDDKIRLQNDWPEAME 386

  Fly   399 PATFQMQNTT----IVSMLEPKTN---SG------------------KTKFPKE-------SSKD 431
            ||..:::.:.    ..|:|.|..:   .|                  |.:.|||       .|:.
plant   387 PAKKKLKRSNDHAPCSSLLFPSADFKQDGDYFSPRKDVWSPECEVELKIQNPKEQGTVAGFESRT 451

  Fly   432 D---QHEEV---SEEDVPTTS-----------------------------TQRFM---DVLT-QW 457
            |   |..::   :.||.|..:                             ...||   |||. |:
plant   452 DSLLQSRDIEMQTNEDFPQVTDLLETSLVADSKCRKQFLTRCQITTPVNINHDFMKDSDVLNFQF 516

  Fly   458 RRTGDTKGTAPSV--PVKRRCSESEELVTRTLKMQKIHTFLS---------QESP-----NEQSS 506
            :...|....:..:  .:.|.||....|.....|:..:..:.|         |.||     .|..|
plant   517 QGLKDELDVSNCIGKHLLRGCSSRVSLTFHEPKLSHVEGYESVVPMIPNEKQSSPRVLETREGGS 581

  Fly   507 KCEAESDAASDVDM-------------AKKDKTQVSLDNSFLNLKEL-AKESEAYD--------- 548
            .|:..||...|..:             ...|:..|.:...| |:..: ..|.::||         
plant   582 YCDVYSDKTPDCSLGSSWQDTDWFTPQCSSDRGCVGIGEDF-NITPIDTAEFDSYDEKVGSKKYL 645

  Fly   549 ---------------------LLTKPQNT------------------------------------ 556
                                 :.:.|..|                                    
plant   646 SSVNVGSSVTGSFCLSSEWSPMYSTPSATKWESEYQKGCRILEQSLRLGRMPDPEFCFSAANNIK 710

  Fly   557 ------PRIDC-----KVLTPIKS--------------------------RRSIFEF-------- 576
                  |.:||     ...|.|::                          |:..|.:        
plant   711 FDHEVIPEMDCCETGTDSFTAIQNCTQLADKICKSSWGHADDVRIDQYSIRKEKFSYMDGTQNNA 775

  Fly   577 --------------------------KTDAMALDKQESPAELN-----SQPPSFTQLSEETDIAS 610
                                      |:|..  .|...|:|.:     :||.:.:|:..:..|..
plant   776 GKQRSKRSRSAPPFYREKKRFISLSCKSDTK--PKNSDPSEPDDLECLTQPCNASQMHLKCSILD 838

  Fly   611 DED-DHIE---------------LPTRIEFDEEMEEGLPSNFSSGEITTSLEEIASSLK------ 653
            |.. |||:               ...|....|..:|.:..:|||.|.   |:.|.|:.|      
plant   839 DVSYDHIQETEKRLSSASDLKASAGCRTVHSETQDEDVHEDFSSEEF---LDPIKSTTKWRHNCA 900

  Fly   654 -------AHEQQQRDR--RTRTKLQRLRFKTEINP---NQNTSAEAELQREIDKEDFARMEIIGQ 706
                   :||...:|.  ...:.|..||....:.|   |:::..:|::.:::||:          
plant   901 VSQVPKESHELHGQDGVFDISSGLLHLRSDESLVPESINRHSLEDAKVLQQVDKK---------- 955

  Fly   707 FNLGFIIVKLEDDLFIVDQHATDEKYNFETLQ------RTTQLEYQRLAVPQNLELTAVNEMVLL 765
                :|.:.....:.||||||.||:...|.|:      :...:.|  |:..|.|.|..:...:|.
plant   956 ----YIPIVACGTVAIVDQHAADERIRLEELRTKVLAGKARTVTY--LSADQELVLPEMGYQLLQ 1014

  Fly   766 NHIDVFEKNGFKFEVDHEAPATKKVR------------------LLGKPHSKRWEFGKEDIDELI 812
            ::.:.....|:...:..|...:.|..                  :||        ....|:|.|.
plant  1015 SYSEQIRDWGWICNITVEGSTSFKKNMSIIQRKPTPITLNAVPCILG--------VNLSDVDLLE 1071

  Fly   813 FMLQDA-PEGTICRPSRVRAMFASRACRKSVMIGTALSRNTTMRRLITQMGEIEQPWNCPHGRPT 876
            |:.|.| .:|:...|..|..:..|:|||.::|.|.:| ..:....:|..:.:....:.|.|||||
plant  1072 FLQQLADTDGSSTIPPSVLRVLNSKACRGAIMFGDSL-LPSECSLIIDGLKQTSLCFQCAHGRPT 1135

  Fly   877 MRHLINIAML 886
            ...|:::..|
plant  1136 TVPLVDLKAL 1145

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pms2NP_477023.1 MutL 26..880 CDD:223400 247/1237 (20%)
HATPase_c 46..>151 CDD:294057 43/107 (40%)
MutL_Trans_hPMS_2_like 238..381 CDD:239566 36/183 (20%)
MutL_C 703..847 CDD:214857 37/168 (22%)
MLH3NP_001328252.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0323
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D735423at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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