DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pms2 and PMS1

DIOPT Version :9

Sequence 1:NP_477023.1 Gene:Pms2 / 36705 FlyBaseID:FBgn0011660 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_567236.1 Gene:PMS1 / 827997 AraportID:AT4G02460 Length:923 Species:Arabidopsis thaliana


Alignment Length:1003 Identity:330/1003 - (32%)
Similarity:499/1003 - (49%) Gaps:217/1003 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 PPPTTALSGQIKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQSVEVS 81
            |.|||..|..|:.|.::.:|:||||||:|.|:.|||||||||:|||||.:||.|:|.|....:|.
plant     7 PSPTTTSSPLIRPINRNVIHRICSGQVILDLSSAVKELVENSLDAGATSIEINLRDYGEDYFQVI 71

  Fly    82 DNGSGVEEMNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDVGVK 146
            |||.|:...|.:.:..|:||||:.:|.|||.:.|:|||||||||||||.::.::||.|:..|...
plant    72 DNGCGISPTNFKVLALKHHTSKLEDFTDLLNLTTYGFRGEALSSLCALGNLTVETRTKNEPVATL 136

  Fly   147 VELDHEGRIKKRSPCARGVGTTVLLANLFSTLPVRRRDFTRNIKKEFTKMCQILQAYCLVTKGVR 211
            :..||.|.:......||.:||||.:..|||.||||.::|.|||:||:.|:..:|.||.|:.||||
plant   137 LTFDHSGLLTAEKKTARQIGTTVTVRKLFSNLPVRSKEFKRNIRKEYGKLVSLLNAYALIAKGVR 201

  Fly   212 ILCSNHTPKGAKTIVLQTHGDQEVMANISAIFGARQAADLVPLKSPFGQGQLTEAELRADLESGA 276
            .:|||.|.|..|::||.|.|...:..||..:||......|.|:.....:                
plant   202 FVCSNTTGKNPKSVVLNTQGRGSLKDNIITVFGISTFTSLQPVSICVSE---------------- 250

  Fly   277 DLADTTSPQISTEDVERLNQADFQLEGFISSCRHGAGRSSRDRQFFFVNSRPCDPKNIAKVMNEV 341
                                 |.::|||:|....|.||:..|||:||:|.||.|...::|::||:
plant   251 ---------------------DCRVEGFLSKPGQGTGRNLADRQYFFINGRPVDMPKVSKLVNEL 294

  Fly   342 YHRYNVQQQPFIYLNIITARSDVDVNLTPDKRQLLINNERILLLALKKSLLDTFGQTPATF---- 402
            |...:.::.|...|:.|......|:|:|||||::..::|..::.:|::.|.:.:..:.|::    
plant   295 YKDTSSRKYPVTILDFIVPGGACDLNVTPDKRKVFFSDETSVIGSLREGLNEIYSSSNASYIVNR 359

  Fly   403 -----QMQNTTIVSMLEPKTN----------SGKTKFPKESSKDDQHEEVSEEDVPTTS-TQRFM 451
                 :..:...||..:.|:|          |.||:..:...|  ::..:.|.::..:| .::|.
plant   360 FEENSEQPDKAGVSSFQKKSNLLSEGIVLDVSSKTRLGEAIEK--ENPSLREVEIDNSSPMEKFK 422

  Fly   452 DVLTQWRRTGDTKGTA------------------PSVPVKRRCSE-SEELVTR------TL---- 487
               .:.:..|..||..                  |.:.|..:.:: |::|.:|      ||    
plant   423 ---FEIKACGTKKGEGSLSVHDVTHLDKTPSKGLPQLNVTEKVTDASKDLSSRSSFAQSTLNTFV 484

  Fly   488 -----KMQKIHTFLSQESP---NEQS---------------SKCEAESDAASDVDMAKKDKTQVS 529
                 |.:.|.|.|| |:|   |:.|               |:|..|.|...|:.::|:|.|...
plant   485 TMGKRKHENISTILS-ETPVLRNQTSSYRVEKSKFEVRALASRCLVEGDQLDDMVISKEDMTPSE 548

  Fly   530 LDNSFLNL--------------KELAK-----ESEAYDLLTK------PQNTPRIDCKVLTPIKS 569
            .|:...|.              :|..|     |..:.:.|||      .::.||  |.  .|::|
plant   549 RDSELGNRISPGTQADNVERHEREHEKPIRFEEPTSDNTLTKGDVERVSEDNPR--CS--QPLRS 609

  Fly   570 RRSIFEFKTDAMALDKQESPAELNSQPPSFTQLSEETDIASDEDDHIELPTRIEFDEEMEEGLPS 634
            ..::.            :|||: ::.|..|:.|  |....:.....:|..:|::           
plant   610 VATVL------------DSPAQ-STGPKMFSTL--EFSFQNLRTRRLERLSRLQ----------- 648

  Fly   635 NFSSGEITTSLEE-------IASSLKAHEQQQRDRRTRTKLQRLRFKTEINPNQNTSAEAELQRE 692
              |:|.::..:..       .|::|:..:....:|:.|..               .:|.:||:|.
plant   649 --STGYVSKCMNTPQPKKCFAAATLELSQPDDEERKARAL---------------AAATSELERL 696

  Fly   693 IDKEDFARMEIIGQFNLGFIIVKLEDDLFIVDQHATDEKYNFETLQRTTQLEYQRLAVPQNLELT 757
            ..||||.||:::|||||||||.|||.|||||||||.|||:|||.|.|:|.|..|.|..|.||||:
plant   697 FRKEDFRRMQVLGQFNLGFIIAKLERDLFIVDQHAADEKFNFEHLARSTVLNQQPLLQPLNLELS 761

  Fly   758 AVNEMVLLNHIDVFEKNGFKFEVDHEAPATKKVRLLGKPHSKRWEFGKEDIDELIFMLQD----- 817
            ...|:.:|.|:|:..:|||..|.:..||..|..||...|:||...||.||:.:||..|.|     
plant   762 PEEEVTVLMHMDIIRENGFLLEENPSAPPGKHFRLRAIPYSKNITFGVEDLKDLISTLGDNHGEC 826

  Fly   818 --------APEGTICRPSRVRAMFASRACRKSVMIGTALSRNTTMRRLITQMGEIEQPWNCPHGR 874
                    :...:|| |||||||.||||||.|||||..|.:| .|::::..:.::|.||||||||
plant   827 SVASSYKTSKTDSIC-PSRVRAMLASRACRSSVMIGDPLRKN-EMQKIVEHLADLESPWNCPHGR 889

  Fly   875 PTMRHLINIAML--------INSDENDE 894
            ||||||:::..|        :|.|::|:
plant   890 PTMRHLVDLTTLLTLPDDDNVNDDDDDD 917

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pms2NP_477023.1 MutL 26..880 CDD:223400 319/970 (33%)
HATPase_c 46..>151 CDD:294057 53/104 (51%)
MutL_Trans_hPMS_2_like 238..381 CDD:239566 37/142 (26%)
MutL_C 703..847 CDD:214857 82/156 (53%)
PMS1NP_567236.1 MutL 16..895 CDD:223400 319/970 (33%)
HATPase_c 37..>141 CDD:294057 53/103 (51%)
MutL_Trans_hPMS_2_like 224..349 CDD:239566 40/161 (25%)
MutL_C 707..863 CDD:214857 82/156 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 144 1.000 Domainoid score I1479
eggNOG 1 0.900 - - E1_COG0323
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 477 1.000 Inparanoid score I342
OMA 1 1.010 - - QHG53578
OrthoDB 1 1.010 - - D735423at2759
OrthoFinder 1 1.000 - - FOG0003329
OrthoInspector 1 1.000 - - oto2929
orthoMCL 1 0.900 - - OOG6_101943
Panther 1 1.100 - - LDO PTHR10073
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2695
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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