DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pms2 and pms1

DIOPT Version :9

Sequence 1:NP_477023.1 Gene:Pms2 / 36705 FlyBaseID:FBgn0011660 Length:899 Species:Drosophila melanogaster
Sequence 2:NP_958476.2 Gene:pms1 / 368631 ZFINID:ZDB-GENE-030616-528 Length:896 Species:Danio rerio


Alignment Length:979 Identity:245/979 - (25%)
Similarity:417/979 - (42%) Gaps:220/979 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 IKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQSVEVSDNGSGVEEMN 91
            :||:..:||..:||.||:.|:...||||:|||:|||::.:|:||::.||..:||.|||||::..:
Zfish     1 MKALPPETVRLLCSSQVITSVLNVVKELIENSLDAGSSSLEVKLENYGLDRIEVRDNGSGIKATD 65

  Fly    92 LEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDVGVKVELDHEGRIK 156
            :..|..|::||||....||..:||:|||||||:|:||:|:::|.|:....|..::..:||.|:|.
Zfish    66 VSVMAVKHYTSKISCHEDLEQLETYGFRGEALASICAISEVIITTKTADDDFSIQYSVDHNGQIV 130

  Fly   157 KRSPCARGVGTTVLLANLFSTLPVRRRDF--TRNIKKEFTKMCQILQAYCLVTKGVRILCSNHTP 219
            .:.|...|.||||..||||..|||||:.:  |:..|.|..::..:|.||.::...:|:..|::  
Zfish   131 SQKPSHLGQGTTVCAANLFKNLPVRRQYYSNTKKCKDELKRVQNLLMAYAVIKPELRVTLSHN-- 193

  Fly   220 KGAKTIVLQTHGDQEVMANISAIFGARQAADLVPLKSPFGQGQLTEAELRAD---LESGADLADT 281
               |.:|.|.....:....:.|:.||...|:::|:     |....:.|:..|   .:.|:||..|
Zfish   194 ---KAVVWQKSRVSDHRTALMAVLGAASVANMLPV-----QHHQEQPEITIDGFFPKPGSDLNST 250

  Fly   282 TSPQISTEDVERLNQADFQLEGFISSCRHGAGRSSRDRQFFFVNSRPCDPKNIAKVMNEVY---- 342
            :|                               |:.|:.|.||||||...|.|.|::.:.|    
Zfish   251 SS-------------------------------STTDKSFIFVNSRPVHHKEILKLIKQYYTSAQ 284

  Fly   343 -------HRYNVQQQPFIYLNIITARSDVDVNLTPDKRQLLINNERILLLALKKSLLDTFGQTPA 400
                   .||     |...:||....|.|||||||||.::::.|:..:||:::..|:..:|.:..
Zfish   285 SNSESVSRRY-----PTFMMNITIPASTVDVNLTPDKTEVMLQNKDEVLLSVETMLISLYGYSNG 344

  Fly   401 TFQMQNT----TIVSMLEPKTNS-----GKTKFPKESSK--DDQHEEVSEEDVPTTSTQRFMDVL 454
            ...::..    .:.|:.|||..|     ...:.|::||.  :.|..|:|..:...||:.   .:.
Zfish   345 EENLKTAGNPPDVTSLDEPKRTSPDISLKHPELPEDSSSNAEKQDGELSLSNTANTSSS---SIS 406

  Fly   455 TQW-RRTGDTKGTAPSVPVKRRCSESEELVTRTLKMQKIHTFLSQESPNEQSSKCEAESDAASDV 518
            ..| ....|......||||       :::|..:......::..:.||.:...|:..||:.:|..|
Zfish   407 EDWVINRSDLDSINCSVPV-------DDVVMNSTADLNSNSPKASESDSGPESQISAENWSAGRV 464

  Fly   519 ----------------------DM----AKKDKTQVSLDNSFLNLKELAKESEAYDLLTKPQNTP 557
                                  |:    ||..|:..|...|.:.::::||.: ||:|::      
Zfish   465 FSNQITGEYLEPVKLHIPKAIEDLGGTEAKSVKSSPSKKPSNVIVEKMAKLT-AYELIS------ 522

  Fly   558 RIDCKVLTPIKSRRSIFEFKTDAMALDKQESPAELNSQPPSFTQLSEETDIASDEDDHIELPTRI 622
              :..|..| .|..|:||..|.:..|  ||:|   .:.|...|..::|...:..|:|      |.
Zfish   523 --NRSVRQP-SSAFSLFEQDTRSQVL--QENP---KASPQDVTAAAKERWESLGEED------RK 573

  Fly   623 EFDEEMEEGLPSNFSSGEITTSLEEIASSLKAHEQQQRDRRTRTKLQ------RLRFKTEINPNQ 681
            :::.:.|:                    ||.|: ..||.|.....:|      ::..::.:|..|
Zfish   574 KYEGKAEK--------------------SLNAY-NLQRKRAAEGGVQCGEGKKQMSAESPLNKAQ 617

  Fly   682 NTSAEAEL--QREIDK-----EDFARMEIIGQFNLGFIIVKLEDDLFIVDQHATDEKYNFETLQR 739
            ....:|.|  |:.:||     ....|........|.|.|..|:..|.::.:.::........:.|
Zfish   618 GVKRKAPLANQQALDKLFSSQPSSKRSPAKISKPLPFTIATLKQSLNLLSEQSSSSVQGLRLVNR 682

  Fly   740 TTQ-----------------------LEYQRLAVPQNLELTAVNEMVLL--------NHIDV--- 770
            ...                       |.::||.....|....:...|||        .::||   
Zfish   683 LASHGAWVVLCGRKLMLLNPFRVEEALLFKRLLEDNILPTVRLQTPVLLTDGVLGGPEYMDVLLN 747

  Fly   771 FEKNGFKFEVDHEAPATK------KVRLLGKPHSKRWE------------FGKEDIDELIFMLQD 817
            .:|:|.:|..|......:      ::|::..|.|....            ||..|:.|::..::.
Zfish   748 MKKDGPEFNGDISLTDPRLVANGFEIRMISGPQSSERHVEVMGMADCMPFFGIGDLREILQAIKA 812

  Fly   818 APEGTI--CRPSRVRAMFASRACRKSVMIGTALSRNTTMRRLITQMGEI-EQPWNCPHGRPTMRH 879
            ....|:  |||.:|.....|.|.|.:..:..:|||......|.....|: ::...|.|..|...:
Zfish   813 RGAKTVAQCRPRKVSHYLESEAVRLARQLPLSLSRADVTNTLCRMQQELQDESQVCIHRLPFFHN 877

  Fly   880 LINI 883
            |:.:
Zfish   878 LVTL 881

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pms2NP_477023.1 MutL 26..880 CDD:223400 244/974 (25%)
HATPase_c 46..>151 CDD:294057 47/104 (45%)
MutL_Trans_hPMS_2_like 238..381 CDD:239566 42/156 (27%)
MutL_C 703..847 CDD:214857 34/197 (17%)
pms1NP_958476.2 mutl 1..320 CDD:273155 126/364 (35%)
HATPase_c 24..143 CDD:280651 54/118 (46%)
MutL_Trans_hPMS_1_like 205..340 CDD:239567 45/175 (26%)
HMGB-UBF_HMG-box 527..591 CDD:238686 21/96 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D735423at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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