DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pms2 and Pms2

DIOPT Version :9

Sequence 1:NP_477023.1 Gene:Pms2 / 36705 FlyBaseID:FBgn0011660 Length:899 Species:Drosophila melanogaster
Sequence 2:XP_006248924.1 Gene:Pms2 / 288479 RGDID:1305483 Length:853 Species:Rattus norvegicus


Alignment Length:937 Identity:379/937 - (40%)
Similarity:527/937 - (56%) Gaps:158/937 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PTTALSGQ----IKAIGKDTVHKICSGQVVLSLAVAVKELVENSIDAGATLVEIKLKDQGLQSVE 79
            ||...|.:    ||.|...:||:||||||||||:.|||||:|||:|||||.::::|||.|:..:|
  Rat     3 PTEGASTECAKAIKPIDGKSVHQICSGQVVLSLSTAVKELIENSVDAGATSIDLRLKDYGVDLIE 67

  Fly    80 VSDNGSGVEEMNLEGMTAKYHTSKIREFVDLLGVETFGFRGEALSSLCALSDMVIQTRHKSTDVG 144
            |||||.||||.|.||:..|:||||||||.||..|||||||||||||||||||:.|.|.|.|..:|
  Rat    68 VSDNGCGVEEENFEGLALKHHTSKIREFADLTQVETFGFRGEALSSLCALSDVTISTCHVSASIG 132

  Fly   145 VKVELDHEGRIKKRSPCARGVGTTVLLANLFSTLPVRRRDFTRNIKKEFTKMCQILQAYCLVTKG 209
            .::.|||.|:|.:::||.|..||||.:.|||.|||||.::|.||||||:.||.|:|||||:::.|
  Rat   133 TRLVLDHNGKIIQKTPCPRPKGTTVSVQNLFYTLPVRHKEFQRNIKKEYAKMVQVLQAYCIISAG 197

  Fly   210 VRILCSNHTPKGAKTIVLQTHGDQEVMANISAIFGARQAADLVP-LKSPFGQGQLTEAELRADLE 273
            :|:.|:|...:|.:..|:.|.|...:..||.::||.:|...||| ::.|.......|..|.|   
  Rat   198 IRVSCTNQLGQGKRQPVVCTSGSSGMKENIGSVFGQKQLQSLVPFVQLPPSDSVCEEYCLSA--- 259

  Fly   274 SGADLADTTSPQISTEDVERLNQADFQLEGFISSCRHGAGRSSRDRQFFFVNSRPCDPKNIAKVM 338
                   ..:|           |:.|::.||||.|.|||||||.||||||:|.|||||..:::::
  Rat   260 -------CGTP-----------QSPFRISGFISQCTHGAGRSSTDRQFFFINQRPCDPAKVSRLV 306

  Fly   339 NEVYHRYNVQQQPFIYLNIITARSDVDVNLTPDKRQLLINNERILLLALKKSLLDTFGQTPATFQ 403
            |||||.||..|.||:.||:......||:|:||||||:|:..|::||..||.||:..|........
  Rat   307 NEVYHMYNRHQYPFVVLNVSVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLMGMFDSDANKLS 371

  Fly   404 MQNTTIVSMLEPKTNSGKTKFPKESSKDDQHE-EVSEEDVPTTSTQRFMDVLTQWRRTGDTKGTA 467
            :....::::   :.|..|....:...:::... .::.|:....|..|..:..: ..||.:||...
  Rat   372 VNQQPLLNV---EGNLVKLHTAEVGEQENSPSLRITAEEKRVASVSRLREAYS-LHRTTETKSWG 432

  Fly   468 P-------SVPVKRR----------------CSESEELVTRTLKMQKIHTFLSQESPNEQSSKCE 509
            |       |.|.::|                |...::||:.|            :||.:...:.:
  Rat   433 PETPELKQSFPSQKRGVSSSCPSDIISYRGLCGSQDKLVSPT------------DSPGDCMDREK 485

  Fly   510 AESDAASDVDMAKKDKTQVSLDNSFLNLKELAKESEAYDLLTKPQNTPRI------DCKVLTPIK 568
            .|.|:.       ...|....:..|                    :||.:      ||.|.:|  
  Rat   486 GEKDSG-------LSSTSAGSEEGF--------------------STPEVASSFSSDCNVSSP-- 521

  Fly   569 SRRSIFEFKTDAMALDKQESPAELNSQPPSFTQLSEETDIASDEDDHIE------------LPTR 621
                             ::.|::.|:.  ...|..|..|..|....|::            .|||
  Rat   522 -----------------EDRPSQENTN--CGEQFLEVDDHLSGTGHHLKPEDNGYKCRASLPPTR 567

  Fly   622 IE---------FDEEMEEGLPSNFSSGEITT-------------SLEEIASSLKAHEQQQRDRRT 664
            :.         .|.....|:|.|.|:.|:..             ||..:|..:|  :.|...:::
  Rat   568 LSPSNAKRFRTEDRPSNVGVPQNTSAAEVDVAVKINKKIVLLDFSLSSLAKQMK--QLQHLKQQS 630

  Fly   665 RTKLQRLRFKTEINPNQNTSAEAELQREIDKEDFARMEIIGQFNLGFIIVKLEDDLFIVDQHATD 729
            :::....:|:.:|.|.:|.:||.||:|||.|..||.|||:||||||||:.||::|||:|||||.|
  Rat   631 KSEHNYRKFRAKICPGENQAAEDELRREIRKSMFAEMEILGQFNLGFIVTKLKEDLFLVDQHAAD 695

  Fly   730 EKYNFETLQRTTQLEYQRLAVPQNLELTAVNEMVLLNHIDVFEKNGFKFEVDHEAPATKKVRLLG 794
            ||||||.||:.|.|:.|||..||.|.||||||.||:.::::|.||||.|.:|.:||.|::.:|:.
  Rat   696 EKYNFEMLQQHTVLQAQRLITPQTLNLTAVNEAVLIENLEIFRKNGFDFIIDEDAPVTERAKLIS 760

  Fly   795 KPHSKRWEFGKEDIDELIFMLQDAPEGTICRPSRVRAMFASRACRKSVMIGTALSRNTTMRRLIT 859
            .|.||.|.||.:|||||||||.|:| |.:|||||||.||||||||||||||||||. :.|::||:
  Rat   761 LPTSKNWTFGPQDIDELIFMLSDSP-GVMCRPSRVRQMFASRACRKSVMIGTALSA-SEMKKLIS 823

  Fly   860 QMGEIEQPWNCPHGRPTMRHLINIAML 886
            .|||::.|||||||||||||:.|:.::
  Rat   824 HMGEMDHPWNCPHGRPTMRHIANLDVI 850

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pms2NP_477023.1 MutL 26..880 CDD:223400 374/922 (41%)
HATPase_c 46..>151 CDD:294057 68/104 (65%)
MutL_Trans_hPMS_2_like 238..381 CDD:239566 61/143 (43%)
MutL_C 703..847 CDD:214857 94/143 (66%)
Pms2XP_006248924.1 mutl 13..344 CDD:273155 172/331 (52%)
HATPase_c 34..148 CDD:294057 72/113 (64%)
MutL_Trans_hPMS_2_like 223..364 CDD:239566 60/141 (43%)
MutL_C 669..812 CDD:214857 88/142 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353972
Domainoid 1 1.000 203 1.000 Domainoid score I2872
eggNOG 1 0.900 - - E1_COG0323
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 650 1.000 Inparanoid score I758
OMA 1 1.010 - - QHG53578
OrthoDB 1 1.010 - - D735423at2759
OrthoFinder 1 1.000 - - FOG0003329
OrthoInspector 1 1.000 - - oto98648
orthoMCL 1 0.900 - - OOG6_101943
Panther 1 1.100 - - LDO PTHR10073
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2695
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.810

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