DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pms2 and Pms2

DIOPT Version :10

Sequence 1:NP_477023.1 Gene:Pms2 / 36705 FlyBaseID:FBgn0011660 Length:899 Species:Drosophila melanogaster
Sequence 2:XP_036020772.1 Gene:Pms2 / 18861 MGIID:104288 Length:875 Species:Mus musculus


Alignment Length:201 Identity:40/201 - (19%)
Similarity:76/201 - (37%) Gaps:54/201 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   439 EEDVPTTSTQRFMDVLTQWRRTGDTKGTAPSVPVKRRCSESEELVTRTLKMQKIH--TFLSQ--- 498
            :.:|..:||:..:|.:          |..|...::    :||..:.::|...|:.  .|.:|   
Mouse   693 DSEVHFSSTKSSLDKI----------GALPDGKIR----QSEPKLKKSLSEDKVSKMNFKTQGRG 743

  Fly   499 ---ESPNEQSSKCEAESDAASDVDMAKKDKTQVSLDNSFL--------------NLKELAKESEA 546
               .||.|:..|.:.|          :|:|..:.::|.::              .|||..||::.
Mouse   744 LVFMSPQEKYEKPKDE----------QKEKLNIWVNNLYVFFVSVLFSAYKREEMLKEKVKENQL 798

  Fly   547 YDLLTKPQ---NTPRIDCK--VLTPIKSRRSIFEFKTDAMALDKQESPAE--LNSQPPSFTQLSE 604
            .:.....|   ....::.:  :|...::|:..||.....:. :..|.||.  |...||.....|.
Mouse   799 QEAELAQQRQIENEELEARLNILREEEARKQDFELDITVLK-EPSEIPASQPLTPSPPKEDLASI 862

  Fly   605 ETDIAS 610
            :|..||
Mouse   863 QTSKAS 868

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pms2NP_477023.1 mutl 25..376 CDD:273155
mutL 33..880 CDD:234630 40/201 (20%)
Pms2XP_036020772.1 COG4642 <86..336 CDD:443680
vATP-synt_E 782..>829 CDD:419987 9/65 (14%)
Blue background indicates that the domain is not in the aligned region.

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