DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr51 and Rxrb

DIOPT Version :10

Sequence 1:NP_611032.2 Gene:Hr51 / 36702 FlyBaseID:FBgn0034012 Length:582 Species:Drosophila melanogaster
Sequence 2:XP_006256022.2 Gene:Rxrb / 361801 RGDID:3611 Length:625 Species:Rattus norvegicus


Alignment Length:607 Identity:154/607 - (25%)
Similarity:230/607 - (37%) Gaps:196/607 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 NKEENSSETRPSSQELHSPQRHCYTPPPAPMHGQAPPPTSTGVAPPTQPPP---PHP------AA 57
            ::..:||...|.||.:..      :.||.|.|..:.||      ||..|||   |.|      .:
  Rat   178 SRSPDSSSPNPLSQGIPP------SSPPGPPHTPSAPP------PPMPPPPLGSPFPVISSSMGS 230

  Fly    58 PNVPNGRLLSWNHSAAAAAAAAAAQAAANSMNHSSAAEGSSM---TRIKGQNLGL---------- 109
            |.:|           ..|....:...::..:|.:.:..|...   ..:|...||:          
  Rat   231 PGLP-----------PPAPPGFSGPVSSPQINSTVSLPGGGSGPPEDVKPPVLGVRGLHCPPPPG 284

  Fly   110 -------ICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQAC 167
                   :|.:|||.|||||||:.:|.||.|||||::|:.|.|.|:.... |.|||..||:||.|
  Rat   285 GPGAGKRLCAICGDRSSGKHYGVYSCEGCKGFFKRTIRKDLTYSCRDNKD-CTVDKRQRNRCQYC 348

  Fly   168 RLKKCLQMGMNKDAVQNERQPRNTATIRPETLREMEHGRALREAAVAVGVFGPPVLLSPPCYGSG 232
            |.:|||..||.::|||.|||......                                    |.|
  Rat   349 RYQKCLATGMKREAVQEERQRGKDKD------------------------------------GDG 377

  Fly   233 LLPPPSLGSLPTGRLLHHNHLTSSMQLAANHMGAGSFPMFNAAGVHHSPKEKAYGMEMATSGNVS 297
                                           .|||..|       ...|.::....|:|.     
  Rat   378 -------------------------------DGAGGAP-------EEMPVDRILEAELAV----- 399

  Fly   298 HSTNSSSNHSIDPSSPAPENAKEINIAGGSVSSVSSSSPTMENDNDDDSIDVTNDNEEPHAVSRS 362
                              |...:..:.|...:..|.|||     ||    .|||           
  Rat   400 ------------------EQKSDQGVEGPGGTGGSGSSP-----ND----PVTN----------- 426

  Fly   363 DSSFIMPQFMSPNLYTHQHETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLL 427
                                 :.:.:.:.||..|:|||.:|.|:.|...||||||...|:||.:.
  Rat   427 ---------------------ICQAADKQLFTLVEWAKRIPHFSSLPLDDQVILLRAGWNELLIA 470

  Fly   428 NAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITKEELAADVRTLHEIFCKYKAVLVDPAEF 492
            :.....|  |.....|.:...|.:....::.|...|....|:   |.|.|:..|.:.:.:|..|.
  Rat   471 SFSHRSI--DVRDGILLATGLHVHRNSAHSAGVGAIFDRSLS---RVLTELVSKMRDMRMDKTEL 530

  Fly   493 ACLKAIVLFRPETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHK 557
            .||:||:||.|:.:||.:|.::|.|:::.:..|..:.|.::..|..||.:|||.||.||.|....
  Rat   531 GCLRAIILFNPDAKGLSNPGEVEILREKVYASLETYCKQKYPEQQGRFAKLLLRLPALRSIGLKC 595

  Fly   558 IESIYFQRTIGNTPMEKVLCDM 579
            :|.::|.:.||:||::..|.:|
  Rat   596 LEHLFFFKLIGDTPIDTFLMEM 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr51NP_611032.2 NR_DBD_PNR 103..194 CDD:143528 47/107 (44%)
NR_LBD_Tlx_PNR_like 354..569 CDD:132748 59/214 (28%)
RxrbXP_006256022.2 None

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