Protein Alignment Hr51 and usp

DIOPT Version :10

• Sequence 1: NP_611032.2
• Gene: Hr51 / 36702
• FlyBaseID: FBgn0034012
• Length: 582
• Species: Drosophila melanogaster
• Sequence 2: NP_476781.1
• Gene: usp / 31165
• FlyBaseID: FBgn0003964
• Length: 508
• Species: Drosophila melanogaster
• Alignment Length: 604
• Identity: 164/604 - (27%)
• Similarity: 248/604 - (41%)
• Gaps: 162/604 - (26%)

  Fly     9 ETRPSSQELHSPQRHCYTPPPAPMHGQAPPPTSTGVAPPTQPPPPHPAAPNVPNGRLLSWNHSAA 73
            |.:|...:|:......::|     ..::|.|....::.....|..:.|:.|         |:||.
  Fly    18 EVKPDISQLNDSNNSSFSP-----KAESPVPFMQAMSMVHVLPGSNSASSN---------NNSAG 68

  Fly    74 AAAAAAAAQAAANSMNHSSAAEGSSMTRIKGQ---NLGL-----ICVVCGDTSSGKHYGILACNG 130
            .|..|.|..:|.          ||:...::.|   |..|     :|.:|||.:||||||:.:|.|
  Fly    69 DAQMAQAPNSAG----------GSAAAAVQQQYPPNHPLSGSKHLCSICGDRASGKHYGVYSCEG 123

  Fly   131 CSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCLQMGMNKDAVQNERQPRNTATIR 195
            |.|||||:||:.|.|.|:... .|::||..||:||.||.:|||..||.::|||.|||
  Fly   124 CKGFFKRTVRKDLTYACRENR-NCIIDKRQRNRCQYCRYQKCLTCGMKREAVQEERQ-------- 179

  Fly   196 PETLREMEHGRALREAAVAVGVFGPPVLLSPPCYGSGLLPPPSLGSLPTGRLLHHNHLTSSMQLA 260
                      |..|.||..:.           ..|.|...|.|:|.             ||.|
  Fly   180 ----------RGARNAAGRLS-----------ASGGGSSGPGSVGG-------------SSSQ-- 208

  Fly   261 ANHMGAGSFPMFNAAGVHHSPKEKAYGMEMATSGNVSHS--TNS-SSNHSIDPSSPAPENAKEIN 322
                |.|     ...||       :.||   .|||.|..  ||| |.:.||:....|.:.|
  Fly   209 ----GGG-----GGGGV-------SGGM---GSGNGSDDFMTNSVSRDFSIERIIEAEQRA---- 250

  Fly   323 IAGGSVSSVSSSSPTMENDNDDDSIDVTNDNEEPHAVSRSDSSFIMPQFMSPNLYTHQHETVYET 387
                            |....|.::  |.....|::..:.|             |......:.:.
  Fly   251 ----------------ETQCGDRAL--TFLRVGPYSTVQPD-------------YKGAVSALCQV 284

  Fly   388 SARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLNAIQWC--IPLDPTGC-----ALFS 445
            ..:.||..|::|:.:|.||::...||||||:.:|.||.:.| :.||  :.||..|.     .|
  Fly   285 VNKQLFQMVEYARMMPHFAQVPLDDQVILLKAAWIELLIAN-VAWCSIVSLDDGGAGGGGGGL-- 346

  Fly   446 VAEHCNNLENNANG----------------DTCITKEELAADVRTLHEIFCKYKAVLVDPAEFAC 494
              .|..:.|..:.|                ::.|.....|...|.|.|:..|.|.:.:|..|.:|
  Fly   347 --GHDGSFERRSPGLQPQQLFLNQSFSYHRNSAIKAGVSAIFDRILSELSVKMKRLNLDRRELSC 409

  Fly   495 LKAIVLFRPETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLLMLPLLRMISSHKIE 559
            ||||:|:.|:.||:|..|:||..:::.:..|.:|.:.:......||.:|||.||.||.||....:
  Fly   410 LKAIILYNPDIRGIKSRAEIEMCREKVYACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQD 474

  Fly   560 SIYFQRTIGNTPMEKVLCD 578
            .::..|...:.|:|::..:
  Fly   475 HLFLFRITSDRPLEELFLE 493

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hr51	NP_611032.2	NR_DBD_PNR	103..194	CDD:143528	46/98 (47%)
		NR_LBD_Tlx_PNR_like	354..569	CDD:132748	65/237 (27%)
usp	NP_476781.1	NR_DBD_RXR	102..178	CDD:143514	40/76 (53%)
		NR_LBD_RXR_like	237..480	CDD:132741	71/282 (25%)