Protein Alignment Hr51 and Rxra

DIOPT Version :10

• Sequence 1: NP_611032.2
• Gene: Hr51 / 36702
• FlyBaseID: FBgn0034012
• Length: 582
• Species: Drosophila melanogaster
• Sequence 2: XP_063139210.1
• Gene: Rxra / 25271
• RGDID: 3610
• Length: 511
• Species: Rattus norvegicus
• Alignment Length: 619
• Identity: 163/619 - (26%)
• Similarity: 234/619 - (37%)
• Gaps: 214/619 - (34%)

  Fly     1 MNKEENSSETRPSSQELHSPQRHCYTPP----PAPMHGQAPPPTST------GVAPP----TQPP 51
            :|....||.|...|  :.:|..|....|    |....||...|.||      |:.||    :.|.
  Rat    59 VNSSSLSSPTGRGS--MAAPSLHPSLGPGLGSPLGSPGQLHSPISTLSSPINGMGPPFSVISSPM 121

  Fly    52 PPH----PAAPNVPNGRLLSWNHSAAAAAAAAAAQAAANS-MNHSSAAEG--------------- 96
            .||    |..|.:..|                ......|| ||..|::|.
  Rat   122 GPHSMSVPTTPTLGFG----------------TGSPQLNSPMNPVSSSEDIKPPLGLNGVLKVPA 170

  Fly    97 ------SSMTRIKGQNLGLICVVCGDTSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCV 155
                  ||.|:       .||.:|||.|||||||:.:|.||.|||||:||:.|.|.|:.... |:
  Rat   171 HPSGNMSSFTK-------HICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNKD-CL 227

  Fly   156 VDKAHRNQCQACRLKKCLQMGMNKDAVQNERQPRNTATIRPETLREMEHGRALREAAVAVGVFGP 220
            :||..||:||.||.:|||.|||.::|||.|||
  Rat   228 IDKRQRNRCQYCRYQKCLAMGMKREAVQEERQ--------------------------------- 259

  Fly   221 PVLLSPPCYGSGLLPPPSLGSLPTGRLLHHNHLTSSMQLAANHMGAGSFPMFNAAGVHHSPKEKA 285
                                   .|:..:.|.:.|:.  :||               ...|.||.
  Rat   260 -----------------------RGKDRNENEVESTS--SAN---------------EDMPVEKI 284

  Fly   286 YGMEMATSGNVSHSTNSSSNHSIDPSSPAPENAKEINIAGGSVSSVSSSSPTMENDNDDDSIDVT 350
            ...|:|.....  .|...:|..::||||                            ||    .||
  Rat   285 LEAELAVEPKT--ETYVEANMGLNPSSP----------------------------ND----PVT 315

  Fly   351 NDNEEPHAVSRSDSSFIMPQFMSPNLYTHQHETVYETSARLLFMAVKWAKNLPSFARLSFRDQVI 415
            |                                :.:.:.:.||..|:|||.:|.|:.|...||||
  Rat   316 N--------------------------------ICQAADKQLFTLVEWAKRIPHFSELPLDDQVI 348

  Fly   416 LLEESWSELFLLNAIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITKEELAADVRTLHEIFC 480
            ||...|:||.:.:.....|.:.........:..|.|:..:...|         |...|.|.|:..
  Rat   349 LLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVG---------AIFDRVLTELVS 404

  Fly   481 KYKAVLVDPAEFACLKAIVLFRPETRGLKDPAQIENLQDQAHVMLSQHTKTQFTAQIARFGRLLL 545
            |.:.:.:|..|..||:|||||.|:::||.:||::|.|:::.:..|..:.|.::..|..||.:|||
  Rat   405 KMRDMQMDKTELGCLRAIVLFNPDSKGLSNPAEVEALREKVYASLEAYCKHKYPEQPGRFAKLLL 469

  Fly   546 MLPLLRMISSHKIESIYFQRTIGNTPMEKVLCDM 579
            .||.||.|....:|.::|.:.||:||::..|.:|
  Rat   470 RLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEM 503

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Hr51	NP_611032.2	NR_DBD_PNR	103..194	CDD:143528	46/90 (51%)
		NR_LBD_Tlx_PNR_like	354..569	CDD:132748	59/214 (28%)
Rxra	XP_063139210.1	None