DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr51 and nhr-267

DIOPT Version :9

Sequence 1:NP_611032.2 Gene:Hr51 / 36702 FlyBaseID:FBgn0034012 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_501621.1 Gene:nhr-267 / 186760 WormBaseID:WBGene00010410 Length:344 Species:Caenorhabditis elegans


Alignment Length:365 Identity:78/365 - (21%)
Similarity:135/365 - (36%) Gaps:97/365 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 CVVCGDTSSGK-HYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCLQ 174
            |.||.||:|.: |:||.:|..|:.||:|:...:  :.|.. ...|.|....:..|:|||...|::
 Worm    10 CQVCQDTASTRHHFGITSCTACASFFRRTTMNQ--FTCNL-DNNCSVSYKKKWVCRACRYNNCIR 71

  Fly   175 MGMNKDAVQ--NERQPRNTATIRPETLREMEHGRALREAAVAVGVFGPPVLLSPPCYGSGLLPPP 237
            .||:||.::  |..:.:|..|.|..|:|     .::|....::.....||.:.          ..
 Worm    72 AGMSKDYIRRGNVDETKNRKTFRKRTIR-----NSIRRNKSSLNRISEPVKMD----------QN 121

  Fly   238 SLGSLPTGRLLHHNHLTSSMQLAANHMGAGSFPMFNAAGVHHSPKEKAYGMEMATSGNVSHSTNS 302
            |.....|...:.|:..||:......|:.......|....|..:..:|..|  :|.:..::.|.| 
 Worm   122 STSRSSTSSSIKHSSDTSTEFSKILHLSNDELLQFYLKEVERTMVQKQRG--LAKNALLAESMN- 183

  Fly   303 SSNHSIDPSSPAPENAKEINIAGGSVSSVSSSS----PTMENDNDDDSIDVTNDNEEPHAVSRSD 363
                             |:.|.....:.:|..|    |.:                  :::.:.|
 Worm   184 -----------------ELMIISAYQNGLSMESCMHCPGV------------------NSLEKED 213

  Fly   364 SSFIMPQFMSPNL-------YTHQHETVYETSARLLFMAVKWAKNLPSFARLS-FRDQV-ILLEE 419
            ...::..|...|:       |:..:..:|||:              |...||| :..|| :.|..
 Worm   214 VQTLLKYFQFANVWMDSVRAYSMSNVDIYETT--------------PKDKRLSEYIQQVKLTLGS 264

  Fly   420 SWSELFLLNAIQ---------WCIPLDPTGCALFSVA-EH 449
            |:|:| .||..:         |.:....|..|:..:| ||
 Worm   265 SFSQL-KLNLYEFAALKSYCIWNMGFFETSIAMKIIAREH 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr51NP_611032.2 NR_DBD_PNR 103..194 CDD:143528 28/85 (33%)
NR_LBD_Tlx_PNR_like 354..569 CDD:132748 25/115 (22%)
nhr-267NP_501621.1 ZnF_C4 9..77 CDD:197701 24/69 (35%)
HOLI 189..337 CDD:214658 28/148 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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