DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr51 and nhr-257

DIOPT Version :9

Sequence 1:NP_611032.2 Gene:Hr51 / 36702 FlyBaseID:FBgn0034012 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_494672.2 Gene:nhr-257 / 182697 WormBaseID:WBGene00015869 Length:331 Species:Caenorhabditis elegans


Alignment Length:108 Identity:30/108 - (27%)
Similarity:51/108 - (47%) Gaps:17/108 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 CVVCGD-TSSGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCLQ 174
            |.:|.| .::..|:|.:.|..|:.||.|:...|  :||.| ..:||:..|.:..|::||...|::
 Worm     8 CRICNDPETTSPHFGAIVCTACASFFGRTTVDK--FRCIA-NNKCVISCAKKITCRSCRYDSCIR 69

  Fly   175 MGMNKDAVQNERQPRN-------------TATIRPETLREMEH 204
            .||||..::..:.|:.             .:.:.|...||..|
 Worm    70 AGMNKFYIRKIKAPKQQVIQEVDQNKTFPNSEMLPNFTRENSH 112

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr51NP_611032.2 NR_DBD_PNR 103..194 CDD:143528 26/96 (27%)
NR_LBD_Tlx_PNR_like 354..569 CDD:132748
nhr-257NP_494672.2 ZnF_C4 7..74 CDD:197701 23/68 (34%)
HOLI 167..316 CDD:214658
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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