DRSC/TRiP Functional Genomics Resources

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Protein Alignment Hr51 and nhr-155

DIOPT Version :9

Sequence 1:NP_611032.2 Gene:Hr51 / 36702 FlyBaseID:FBgn0034012 Length:582 Species:Drosophila melanogaster
Sequence 2:NP_503239.2 Gene:nhr-155 / 182602 WormBaseID:WBGene00015758 Length:361 Species:Caenorhabditis elegans


Alignment Length:407 Identity:79/407 - (19%)
Similarity:138/407 - (33%) Gaps:140/407 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 CVVCGDTS-SGKHYGILACNGCSGFFKRSVRRKLIYRCQAGTGRCVVDKAHRNQCQACRLKKCLQ 174
            |.||..:. :..|:|...|..|:.||:|:|...:.:.|:: ...|.:....|..|::||..||:.
 Worm     8 CQVCSTSERTSYHFGTTTCMACASFFRRTVAFGIRFLCKS-NNNCSISPKARFFCRSCRFDKCVN 71

  Fly   175 MGMNKDAVQNERQPRNTATIRPETLREMEHGRALREAAVAVGVFGPPVLLSPPCYGSGLLPPPSL 239
            :||||..||.:|..:|.    |:.:.|..:                                   
 Worm    72 VGMNKSQVQQKRDLKNA----PKYIMESRN----------------------------------- 97

  Fly   240 GSLPTGRLLHHNHLTSSMQLAANHMGAGSFPMFNAAGVHHSPKEKAYGMEMATSGNVSHSTNSSS 304
                                               .|||    |...|........:..|.::||
 Worm    98 -----------------------------------LGVH----EVVRGYTTTRHAALPSSNSTSS 123

  Fly   305 NHSIDPSSPAPENAKEINIAGGSVSSVSSSSPT----MENDNDDDSIDVTNDNEEPHAVSRSDSS 365
            ..|...|||              |.|.:..||:    :.|.:.||.:.        :.|.:.:.|
 Worm   124 VESTPLSSP--------------VDSTADPSPSEFSIILNTHPDDLLQ--------YYVKQVEMS 166

  Fly   366 FIMPQ--FMSPNLYTHQHETVYETSARLLFMAVKWAKNLPSFARLSFRDQVILLEESWSELFLLN 428
            .:..|  .:...|..:..:.:.:.|..|..::::...|.|....|...|..:||:    .....|
 Worm   167 IVQKQLCLVQNTLLVNSADELRDLSDVLNDLSMESCMNCPGVDILRQEDIEVLLK----TFHFAN 227

  Fly   429 AIQWCIPLDPTGCALFSVAEHCNNLENNANGDTCITKEELAADVRTLHEIFCKYKAVL------- 486
            .  |   ||    |:::.:.||.::        |.:..|   |...|::...:.|:.|       
 Worm   228 V--W---LD----AVWAFSRHCESI--------CDSTFE---DNEPLYQFINQVKSTLGSSLFQL 272

  Fly   487 -VDPAEFACLKAIVLFR 502
             ::..|||.|||..:::
 Worm   273 KLNIYEFAALKAFCVWK 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Hr51NP_611032.2 NR_DBD_PNR 103..194 CDD:143528 27/83 (33%)
NR_LBD_Tlx_PNR_like 354..569 CDD:132748 31/159 (19%)
nhr-155NP_503239.2 ZnF_C4 7..77 CDD:197701 22/69 (32%)
HOLI 197..340 CDD:214658 25/117 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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