DRSC/TRiP Functional Genomics Resources

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Protein Alignment Xpc and RAD4

DIOPT Version :9

Sequence 1:NP_725451.1 Gene:Xpc / 36697 FlyBaseID:FBgn0004698 Length:1294 Species:Drosophila melanogaster
Sequence 2:NP_011089.4 Gene:RAD4 / 856909 SGDID:S000000964 Length:754 Species:Saccharomyces cerevisiae


Alignment Length:763 Identity:181/763 - (23%)
Similarity:296/763 - (38%) Gaps:212/763 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   641 LKEEYSEL---GLS-KKLLKPTLSSKLVLKSKNQS-SFSSNKSDTSFEENPSTSSSSKSLKEETA 700
            |.:||.||   .|: |:..|..||.:..::.|||. ..:..|..|...|.|..|       ..|.
Yeast     5 LPKEYFELIRKALNEKEAEKAPLSRRRRVRRKNQPLPDAKKKFKTGLNELPRES-------VVTV 62

  Fly   701 KLSSSKLEDKKVASPAETKT-KVQSSLLKRVTTQNISESGDSKKPKVAPVDTFSPVAGRTRRATV 764
            .|.||  :|..|..|.:... ::|||          .|..||::        |..|......|.|
Yeast    63 NLDSS--DDGVVTVPTDDSVEEIQSS----------EEDYDSEE--------FEDVTDGNEVAGV 107

  Fly   765 KPKTEEKPQVVGSPVIPKLMLSKVKQLNAKHSDTENASPANKHLQEQRN--TRETRSRSKSPKVL 827
            :..:.|                 :|..:.::||....|         ||  :.|.|.|.|...:|
Yeast   108 EDISVE-----------------IKPSSKRNSDARRTS---------RNVCSNEERKRRKYFHML 146

  Fly   828 ----------ISPSFLKKKSDGADSTSDPQKHQMAPETKARISPNFLSEALPARQLRSRGQKASS 882
                      |...::..|                     |:|.. ||..:|        :|...
Yeast   147 YLVCLMVHGFIRNEWINSK---------------------RLSRK-LSNLVP--------EKVFE 181

  Fly   883 LAIPQLDGGDDVPLPKKRPKLEKLKNSQDSDEVFEPAKPVKKA-----------PVLPKSVQNLR 936
            |..||.|  :::||...|..|:.||...   |:::....:.|.           ..:..|..|.|
Yeast   182 LLHPQKD--EELPLRSTRKLLDGLKKCM---ELWQKHWKITKKYDNVGLYMRTWKEIEMSANNKR 241

  Fly   937 KDRRVMSTD-----DEG--------------------GSRL----------NRKTDAS------- 959
            |.:.:..:|     .:|                    .:||          |.|.|.|       
Yeast   242 KFKTLKRSDFLRAVSKGHGDPDISVQGFVAMLRACNVNARLIMSCQPPDFTNMKIDTSLNGNNAY 306

  Fly   960 -DM------WVEVWSDVEEQWICIDLFKGKLHCVDTIR---KNATPGLA--------YVFAFQDD 1006
             ||      |.|||....::||.:|  ...|..::.:|   |.|..|:|        ||.|:...
Yeast   307 KDMVKYPIFWCEVWDKFSKKWITVD--PVNLKTIEQVRLHSKLAPKGVACCERNMLRYVIAYDRK 369

  Fly  1007 QSLKDVTARYCASWSTTVRKARVEK-----AWLDETI-APYLGRRTKRDITEDDQLRRIHSDKPL 1065
            ...:|||.||....::.|||.|:.|     .|..:.| |.:..:|||.|..||....:....:.:
Yeast   370 YGCRDVTRRYAQWMNSKVRKRRITKDDFGEKWFRKVITALHHRKRTKIDDYEDQYFFQRDESEGI 434

  Fly  1066 PKSISEFKDHPLYVLERHLLKFQGLYPPDAPTLGFIR-----GEA--VYS-RDCVHLLHSREIWL 1122
            |.|:.:.|:||.||||:.:.:.| :..|.....|:::     |:.  ||: ||...|..:|: |.
Yeast   435 PDSVQDLKNHPYYVLEQDIKQTQ-IVKPGCKECGYLKVHGKVGKVLKVYAKRDIADLKSARQ-WY 497

  Fly  1123 KSARVVKLGEQPYKVVK---ARPKWDRLTRTVIKDQPLEIFGYWQTQEYEPPTAE-NGIVPRNAY 1183
            .:.|::|.|.:..||:|   .|||.:      .:::...::.:..|:.|.||.|. :|.:.:|.:
Yeast   498 MNGRILKTGSRCKKVIKRTVGRPKGE------AEEEDERLYSFEDTELYIPPLASASGEITKNTF 556

  Fly  1184 GNVELFKDCMLPKKTVHLRLPGLMRICKKLNIDCANAVVGFDFHQGA-CHPMYDGFIVCEEFREV 1247
            ||:|:|...|:|.....:..|..::..:.|.::.|.||..|.|.:|: ..|:..|.:|.:..||.
Yeast   557 GNIEVFAPTMIPGNCCLVENPVAIKAARFLGVEFAPAVTSFKFERGSTVKPVLSGIVVAKWLREA 621

  Fly  1248 VTAAWEEDQQVQVLKEQEKYETRVYG---NWKKLIKGLLIRERLKKKY 1292
            :..|.:   .::.::|.:..:..:.|   :|..|:..|.||.:|...|
Yeast   622 IETAID---GIEFIQEDDNRKEHLLGALESWNTLLLKLRIRSKLNSTY 666

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XpcNP_725451.1 rad4 345..1294 CDD:273170 181/763 (24%)
Rad4 925..1057 CDD:281786 49/208 (24%)
BHD_1 1062..1112 CDD:214984 17/57 (30%)
BHD_2 1115..1170 CDD:214985 13/57 (23%)
BHD_3 1178..1252 CDD:198100 20/74 (27%)
RAD4NP_011089.4 RAD4 1..669 CDD:227822 181/763 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346536
Domainoid 1 1.000 44 1.000 Domainoid score I3157
eggNOG 1 0.900 - - E1_COG5535
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4422
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002146
OrthoInspector 1 1.000 - - oto99109
orthoMCL 1 0.900 - - OOG6_102113
Panther 1 1.100 - - O PTHR12135
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1099
SonicParanoid 1 1.000 - - X1843
TreeFam 00.000 Not matched by this tool.
1110.720

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