Protein Alignment Xpc and RAD4

DIOPT Version :10

• Sequence 1: NP_725451.1
• Gene: Xpc / 36697
• FlyBaseID: FBgn0004698
• Length: 1294
• Species: Drosophila melanogaster
• Sequence 2: NP_197166.2
• Gene: RAD4 / 831525
• AraportID: AT5G16630
• Length: 865
• Species: Arabidopsis thaliana
• Alignment Length: 1125
• Identity: 240/1125 - (21%)
• Similarity: 385/1125 - (34%)
• Gaps: 425/1125 - (37%)

  Fly   236 SQAATMDVNALLALGENQNYQSVEVEEREGNQRKKAGRGAPAAPPTLDEPSRLSKTKSTRIKRHT 300
            :||:.:.||.:|                 .....:..||........|...| .|..:.:.|:..
plant    13 AQASRVAVNKVL-----------------DKSSARGSRGKKKQDDNCDSAKR-DKGVNGKGKQAL 59

  Fly   301 KTRPVSTVVANAG-------DTDDSDFEEVADADLSSDQDDGETPNISGDLEIRVGLEGLRP-TK 357
            ..|.:..|:.:.|       :.:|||:|:.....|.|..||.   |:....|:.:..:...| .|
plant    60 DARLIDNVLEDRGCGNVDDDEMNDSDWEDCPIPSLDSTVDDN---NVDDTRELTIEFDDDVPDAK 121

  Fly   358 EQKTQHELEMALKRRLNRDIKDRQILLHKVSLMCQIARSLKYNRLLSE--SDSLMQAT-LKLLPS 419
            :||..:        |...:.|.|..|:|||.|:|.:||    .|::..  :|.|:||. |.||||
plant   122 KQKNAY--------RATAEDKVRAELVHKVHLLCLLAR----GRIVDSACNDPLIQAALLSLLPS 174

  Fly   420 RNAYPTERGTELKYLQSFVTWFKTSIKLLSP-------NLYSAQSPATKEAILEALLEQVKRKEA 477
                         ||.......|.::|.::|       |...:.||:::::...:|...::.::.
plant   175 -------------YLTKVSNLEKVTVKDIAPLLRWVRENFSVSCSPSSEKSFRTSLAFALESRKG 226

  Fly   478 RCKQDMIFIFIALARGMGMHCRLIVNLQPMPLRPAASDLIPIKLRPDDKNKSQTVESERESEDEK 542
            .. :::..:.:||.|.:.:..|.:..|....|:|.|           |:|
plant   227 TA-EELAALAVALLRALKLTTRFVSILDVASLKPGA-----------DRN--------------- 264

  Fly   543 PKKDKKAGKPAEKESSKSTISKEAEKKNNAKKAEAKPLSKSTTKGSETTKSGTVPKVKKELSLSS 607
                                  |:..:|.||...          |...|.:..||   |:.::||
plant   265 ----------------------ESSGQNRAKMKH----------GIFRTSTLMVP---KQQAISS 294

  Fly   608 KLVEKSKHQKAYTSSKSDTSFDEKPSTSSSSKCLKEEYSELGLSKKLLKPTLSSKLVLKSKNQSS 672
            ...:.|.|.|    :||..   |||              :||
plant   295 YPKKSSSHVK----NKSPF---EKP--------------QLG----------------------- 315

  Fly   673 FSSNKSDTSFEENPSTSSSSKSLKEETAKLSSSKLEDKKVASPAETKTKVQSSLLKRVTTQNISE 737
                        ||               |.|.:::|..|.|..|....::|.
plant   316 ------------NP---------------LGSDQVQDNAVNSSCEAGMSIKSD------------ 341

  Fly   738 SGDSKKPKVAPVDTFSPVAGRTRRATVKPKTEEKPQVVGSPVIPKLMLSKVKQLNAKHSDTENAS 802
                                .|||   |...|.:.|:.       :.||..       :|.:.:|
plant   342 --------------------GTRR---KGDVEFERQIA-------MALSAT-------ADNQQSS 369

  Fly   803 PANKHLQEQRNTRETRSRSKSPKVLISPSFLKKKSDGADSTSDPQKHQMAPETKARISPNFLSEA 867
            ..|       ||::.|
plant   370 QVN-------NTKKVR------------------------------------------------- 378

  Fly   868 LPARQLRSRGQKASSLAIPQLDGGDDVPLPKKRPKLEKLKNSQD-SDEVFEPAKPVKKAPVLPKS 931
                                              ::.|:.||.. ||:|...|
plant   379 ----------------------------------EITKISNSSSVSDQVISTA------------ 397

  Fly   932 VQNLRKDRRVMSTDDEGGSRLNRKTDASDMWVEVW---SDVEEQWICIDLFKGKLHCVDTIRKNA 993
                            .||   :|.|:...|:||:   .:::.:|:.:|...|.:.....|...|
plant   398 ----------------FGS---KKVDSPLCWLEVYCNGENMDGKWVHVDAVNGMIDAEQNIEAAA 443

  Fly   994 T---PGLAYVFAFQDDQSLKDVTARYCASWSTTVRKARVEKAWLDETIAPYLGRRTKRDITEDDQ 1055
            .   ..|.||.||... ..||||.|||..|. |:...||...|.|..:||.:...:.....||..
plant   444 AACKTVLRYVVAFAAG-GAKDVTRRYCTKWH-TISSKRVSSVWWDMVLAPLVHLESGATHDEDIA 506

  Fly  1056 LRRIHSDKP-------------------------------LPKSISEFKDHPLYVLERHLLKFQG 1089
            ||..:...|                               ||.:...:|.|.:|.:|:.|.|.|.
plant   507 LRNFNGLNPVSSRASSSSSSFGIRSALEDMELATRALTESLPTNQQAYKSHEIYAIEKWLHKNQI 571

  Fly  1090 LYPPDAPTLGFIRGEAVYSRDCVHLLHSREIWLKSARVVKLGEQPYKVVKARPKWDRLTRTVIKD 1154
            |: |..|.|||..|..||.|.||..|.::|.||:....:|..|.|.|::|...|:.:     :||
plant   572 LH-PKGPVLGFCSGHPVYPRTCVQTLKTKERWLRDGLQLKANEVPSKILKRNSKFKK-----VKD 630

  Fly  1155 ------------QPLEIFGYWQTQEYEPPTAENGIVPRNAYGNVELFKDCMLPKKTVHLRLPGLM 1207
                        ..:|::|.||.:....|.|.|||||:|..|.|:::.:..||..|||||.|.:.
plant   631 FEDGDNNIKGGSSCMELYGKWQMEPLCLPPAVNGIVPKNERGQVDVWSEKCLPPGTVHLRFPRIF 695

  Fly  1208 RICKKLNIDCANAVVGFDFHQGACHPMYDGFIVCEEFREVVTAAWEEDQQVQVLKEQEKYETRVY 1272
            .:.|:..||.|.|:|||::..|...|:::|.:||.||::.:..|:.|:|:.:..:|:.:.|.:..
plant   696 AVAKRFGIDYAPAMVGFEYRSGGATPIFEGIVVCTEFKDTILEAYAEEQEKKEEEERRRNEAQAA 760

  Fly  1273 GNWKKLIKGLLIRERLKKKY 1292
            ..|.:|:..:|.|||||.:|
plant   761 SRWYQLLSSILTRERLKNRY 780

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Xpc	NP_725451.1	rad4	345..1294	CDD:273170	217/1009 (22%)
		PTZ00108	<696..924	CDD:240271	28/228 (12%)
RAD4	NP_197166.2	rad4	107..781	CDD:273170	217/1010 (21%)