DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Xpc and xpc-1

DIOPT Version :9

Sequence 1:NP_725451.1 Gene:Xpc / 36697 FlyBaseID:FBgn0004698 Length:1294 Species:Drosophila melanogaster
Sequence 2:NP_500156.2 Gene:xpc-1 / 177002 WormBaseID:WBGene00022296 Length:1119 Species:Caenorhabditis elegans


Alignment Length:1040 Identity:267/1040 - (25%)
Similarity:406/1040 - (39%) Gaps:280/1040 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   506 PMP-------LRPAASDLIPIKLRPDDKNKSQTVESERESEDE-KPKKDKKAGKPAEKESSKSTI 562
            |||       .:|:.....||:...|:..    .|.|.|.|.| ..:|.||.|:...|......|
 Worm    47 PMPPKTTKKSTKPSRKQGSPIEAELDEMG----FELENEEEAEIVVQKSKKNGRKLVKIDENLRI 107

  Fly   563 SKEAEKKN------NAKKAEAKP---LSKSTTKGSETTKS-----GTVPKVKKELSLSSK--LVE 611
            |.|...|:      |..:.:.||   ..||:..||...||     ..|..|.|..:..||  ::|
 Worm   108 SAENGSKSSNFLEENRMEIDEKPGNLAKKSSKNGSRVVKSDEKSENLVQSVPKSTTNGSKVAIIE 172

  Fly   612 KSKHQKAYTSSKSDTSFDEKP--STSSSSKCLKEEYSELG-------LSKKLLKPTLSSKLVLKS 667
            .....:|....||..| ||||  |..:.||..:...:.:.       .:||:.......:|.| |
 Worm   173 DDPEIRAENGVKSSKS-DEKPDFSAQNGSKLAQNAPNRISRPRRSVTTAKKVSYVPSDDQLEL-S 235

  Fly   668 KNQSSFSSNKSDTSFEENPSTSSSSKSLKEETAKLSSSK---------------LEDKKVASPAE 717
            .:.|...|:..|...|..|.|.|.....:|::.|:|.|:               .||..:..|:|
 Worm   236 SSSSELESSSEDEDTEIRPKTGSKIAKKREKSFKISESESSSESPDDESEASEASEDPSIPGPSE 300

  Fly   718 --TKTKVQ----------------------SSLLKRVTTQNISESGDSKKP---------KVAP- 748
              .:.|:|                      :|:.::  |.|......:|||         |..| 
 Worm   301 PRKRRKIQRKSTLSSGGATTKDLHWPKCSKASIARK--TGNPGSKNAAKKPAKSSLRMAQKQKPD 363

  Fly   749 ---------VDTFSPVAGRTRRA----------TVKPKTEE--------------KPQVVGSPVI 780
                     .:|...:|...||.          ..:.|.||              |....|..::
 Worm   364 QPWKKNLKDYETDRKLAKGERRMLEYRHVAHAYVARGKIEEITYDEAYKLHEMMKKAYFAGRSLL 428

  Fly   781 PKLMLSKVK----QLNAKHSDTENASPANKHLQEQRNTRETRSRSK---------SPKVL---IS 829
            ...:|..|:    |.|.|.|:.          .:::||....|.|:         .|.::   |.
 Worm   429 DAAVLDPVEFEKSQKNVKKSEK----------NDEKNTAGDSSSSEDEWEEMEHFQPPIIDDNIE 483

  Fly   830 PSFLKKKSDGADSTSDPQKHQMAPETKARIS---------------------------------- 860
            .| :..:..|.|...:..|...|...:..|:                                  
 Worm   484 VS-IDHEGGGGDDGEEVVKDWWAIYLRQEINRKIREMWENTHKVHLLCFMAHLKFVVKIALDESL 547

  Fly   861 -PNFLSEALPARQLRSRGQKASSL------------AIPQLDG--------------GDDVPLPK 898
             |:.:...||...|:..|:....:            |...|:|              |.:...|:
 Worm   548 VPSLMMSQLPNGYLKFIGEPVVPIDIMKNLVKWFADAFRPLNGVVSVASIEQDSLLEGHEARYPE 612

  Fly   899 KRPKLEKLKNSQ----DSDE------------------VFEPAKPVKKAPVLPKSVQN-LRKDRR 940
            .| :|..|.:::    |.|.                  |...|.|.:......|.:|| |.|.|.
 Worm   613 TR-RLTALVDAKCFETDLDRATLLFCLLRGLELTTRLVVNVRAIPRRWDKTQQKELQNELSKFRE 676

  Fly   941 V----MSTDDEGGSRLNRKT------------------------DASDMWVEVWSDVEEQWICID 977
            :    .:|..|....:..|:                        :..:.|||.|...|::|||:|
 Worm   677 LSRSRSTTPGEKSLEIQEKSGEKSQKPAKKGQKSEKKAAKKVVVEERNYWVEYWQPREKRWICVD 741

  Fly   978 LFKGKLH-CVD---TIRKNATPGLAYVFAFQDDQSLKDVTARY---CASWSTTVRKARVEKAWLD 1035
                .|| .||   :|.:::...::||||..:.|.:.:|:.||   |.  ....|:.|....|:.
 Worm   742 ----PLHKSVDEPLSIHEHSASPISYVFAIDNKQGICEVSQRYAMDCV--KQDFRRRRTNPKWVA 800

  Fly  1036 ETI-APYLGRRTKRDITEDDQLRRIHSDKPLPKSISEFKDHPLYVLERHLLKFQGLYPPDA--PT 1097
            .|: .|.....::|...|..|:|.....:|||..:||:|:||||.||:.||||:.:|||.|  ..
 Worm   801 WTLFLPPFAANSERKKWEMMQMREDLVKRPLPTVMSEYKNHPLYALEKDLLKFEAIYPPPATQKP 865

  Fly  1098 LGFIRGEAVYSRDCVHLLHSREIWLKSARVVKLGEQPYKVVKARPKWDRLTRTVIKDQPLEIFGY 1162
            ||.|||..||.|..|..|.....|||.||.||:||:|||:|||||. .|:.....:|:.|:::||
 Worm   866 LGQIRGHNVYPRSTVFTLQGENNWLKLARSVKIGEKPYKIVKARPD-PRIPVEDREDKFLDVYGY 929

  Fly  1163 WQTQEYEPPTAENGIVPRNAYGNVELFKDCMLPKKTVHLRLPGLMRICKKLNIDCANAVVGFDFH 1227
            |||::|..|..:||.:|.|.||||.:|.:.|.|....:|:|.||::|.:||...|..||||:.|.
 Worm   930 WQTEKYRRPPLKNGKIPHNEYGNVYMFNENMCPLDCTYLKLSGLVQISRKLGKQCIPAVVGWAFD 994

  Fly  1228 QGACHPMYDGFIVCEEFREVVTAAWEEDQQVQVLKEQEKYETRVYGNWKKLIKGLLIRERLKKKY 1292
            .|..||:.||.||.|:.......|||:.:..:..||:::...:::.||||||||:|....::|::
 Worm   995 GGFTHPVIDGAIVLEKDAIDFINAWEKLESGRAEKEEKQRVEKIHENWKKLIKGMLRLAYVRKQF 1059

  Fly  1293  1292
             Worm  1060  1059

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
XpcNP_725451.1 rad4 345..1294 CDD:273170 267/1040 (26%)
Rad4 925..1057 CDD:281786 40/168 (24%)
BHD_1 1062..1112 CDD:214984 28/51 (55%)
BHD_2 1115..1170 CDD:214985 27/54 (50%)
BHD_3 1178..1252 CDD:198100 30/73 (41%)
xpc-1NP_500156.2 Rad4 688..823 CDD:281786 32/140 (23%)
BHD_1 827..880 CDD:214984 28/52 (54%)
BHD_2 883..936 CDD:214985 26/53 (49%)
BHD_3 945..1019 CDD:198100 30/73 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167308
Domainoid 1 1.000 63 1.000 Domainoid score I6793
eggNOG 1 0.900 - - E1_COG5535
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 297 1.000 Inparanoid score I1656
Isobase 1 0.950 - 0 Normalized mean entropy S4422
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002146
OrthoInspector 1 1.000 - - oto20340
orthoMCL 1 0.900 - - OOG6_102113
Panther 1 1.100 - - LDO PTHR12135
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1099
SonicParanoid 1 1.000 - - X1843
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.820

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