Sequence 1: | NP_725451.1 | Gene: | Xpc / 36697 | FlyBaseID: | FBgn0004698 | Length: | 1294 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_500156.2 | Gene: | xpc-1 / 177002 | WormBaseID: | WBGene00022296 | Length: | 1119 | Species: | Caenorhabditis elegans |
Alignment Length: | 1040 | Identity: | 267/1040 - (25%) |
---|---|---|---|
Similarity: | 406/1040 - (39%) | Gaps: | 280/1040 - (26%) |
- Green bases have known domain annotations that are detailed below.
Fly 506 PMP-------LRPAASDLIPIKLRPDDKNKSQTVESERESEDE-KPKKDKKAGKPAEKESSKSTI 562
Fly 563 SKEAEKKN------NAKKAEAKP---LSKSTTKGSETTKS-----GTVPKVKKELSLSSK--LVE 611
Fly 612 KSKHQKAYTSSKSDTSFDEKP--STSSSSKCLKEEYSELG-------LSKKLLKPTLSSKLVLKS 667
Fly 668 KNQSSFSSNKSDTSFEENPSTSSSSKSLKEETAKLSSSK---------------LEDKKVASPAE 717
Fly 718 --TKTKVQ----------------------SSLLKRVTTQNISESGDSKKP---------KVAP- 748
Fly 749 ---------VDTFSPVAGRTRRA----------TVKPKTEE--------------KPQVVGSPVI 780
Fly 781 PKLMLSKVK----QLNAKHSDTENASPANKHLQEQRNTRETRSRSK---------SPKVL---IS 829
Fly 830 PSFLKKKSDGADSTSDPQKHQMAPETKARIS---------------------------------- 860
Fly 861 -PNFLSEALPARQLRSRGQKASSL------------AIPQLDG--------------GDDVPLPK 898
Fly 899 KRPKLEKLKNSQ----DSDE------------------VFEPAKPVKKAPVLPKSVQN-LRKDRR 940
Fly 941 V----MSTDDEGGSRLNRKT------------------------DASDMWVEVWSDVEEQWICID 977
Fly 978 LFKGKLH-CVD---TIRKNATPGLAYVFAFQDDQSLKDVTARY---CASWSTTVRKARVEKAWLD 1035
Fly 1036 ETI-APYLGRRTKRDITEDDQLRRIHSDKPLPKSISEFKDHPLYVLERHLLKFQGLYPPDA--PT 1097
Fly 1098 LGFIRGEAVYSRDCVHLLHSREIWLKSARVVKLGEQPYKVVKARPKWDRLTRTVIKDQPLEIFGY 1162
Fly 1163 WQTQEYEPPTAENGIVPRNAYGNVELFKDCMLPKKTVHLRLPGLMRICKKLNIDCANAVVGFDFH 1227
Fly 1228 QGACHPMYDGFIVCEEFREVVTAAWEEDQQVQVLKEQEKYETRVYGNWKKLIKGLLIRERLKKKY 1292
Fly 1293 1292 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Xpc | NP_725451.1 | rad4 | 345..1294 | CDD:273170 | 267/1040 (26%) |
Rad4 | 925..1057 | CDD:281786 | 40/168 (24%) | ||
BHD_1 | 1062..1112 | CDD:214984 | 28/51 (55%) | ||
BHD_2 | 1115..1170 | CDD:214985 | 27/54 (50%) | ||
BHD_3 | 1178..1252 | CDD:198100 | 30/73 (41%) | ||
xpc-1 | NP_500156.2 | Rad4 | 688..823 | CDD:281786 | 32/140 (23%) |
BHD_1 | 827..880 | CDD:214984 | 28/52 (54%) | ||
BHD_2 | 883..936 | CDD:214985 | 26/53 (49%) | ||
BHD_3 | 945..1019 | CDD:198100 | 30/73 (41%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C160167308 | |
Domainoid | 1 | 1.000 | 63 | 1.000 | Domainoid score | I6793 |
eggNOG | 1 | 0.900 | - | - | E1_COG5535 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 297 | 1.000 | Inparanoid score | I1656 |
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S4422 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0002146 | |
OrthoInspector | 1 | 1.000 | - | - | oto20340 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_102113 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR12135 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1099 |
SonicParanoid | 1 | 1.000 | - | - | X1843 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
13 | 12.820 |