DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trpm and trpm1a

DIOPT Version :9

Sequence 1:NP_001097320.1 Gene:Trpm / 36694 FlyBaseID:FBgn0265194 Length:2023 Species:Drosophila melanogaster
Sequence 2:XP_017212406.1 Gene:trpm1a / 791196 ZFINID:ZDB-GENE-070112-1372 Length:1653 Species:Danio rerio


Alignment Length:1797 Identity:687/1797 - (38%)
Similarity:956/1797 - (53%) Gaps:358/1797 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 KRSSVSSTLSKVLILNVRDLLKAHAGSEPLKEHQPRSWIETNFQKRECIKFIPCPKDDTKCCCGQ 144
            ||:|:..|.|               ||:..:    |:|||..|.||||....| .|:..||||||
Zfish    17 KRASIKRTSS---------------GSQKAQ----RAWIERTFLKRECNHIFP-SKEPNKCCCGQ 61

  Fly   145 AQITHQTI-PG-----IESGS------PGDLWLPTKHTRPQPTDAYGTIEFQGGAHPTKAQYVRL 197
            ....|..| ||     :|.|.      |.:.|...|||:..|||:||.||||||.|..||.|:|:
Zfish    62 LVNQHVAILPGSTNKNVEEGQVVPIEPPQEKWSVAKHTQAMPTDSYGIIEFQGGGHINKAMYIRV 126

  Fly   198 SFDTRPELLVQLFTKEWNLELPKLLITVQGGKANFDLQAKLKKEIRKGLLKAAKTTGAWIFTGGT 262
            |:||:|:.|:.|..|:|.||||.|||:|.||..|||||.|||:...|||:|||.||||||||||.
Zfish   127 SYDTKPDNLLHLMVKDWQLELPTLLISVHGGLQNFDLQPKLKQVFGKGLIKAAVTTGAWIFTGGV 191

  Fly   263 NTGVTKQVGDALLLEGQQRTGRVVSIGIAPWGIVERNHELLGHNREVPCHSISSPRSKLAVLNNR 327
            :|||.:.|||||.....:..|:|.:||||||||||...:|:|.:...|..::|:|.|||:||||.
Zfish   192 STGVIRHVGDALKDHSSKSRGKVCAIGIAPWGIVENKEDLIGRDVTRPYQTMSNPLSKLSVLNNS 256

  Fly   328 HAYFLLVDNGTQAKYGAELILRRKLEKFISNLKLHPFTHSSTPVVCLVIEGGTNTIRAVLEYVTD 392
            |::|:|.||||..|||||:.|||:|||.||..|::.......|:|||::|||.|.|..|||.:.:
Zfish   257 HSHFILADNGTHGKYGAEVRLRRQLEKHISLQKINTRLGQGVPLVCLILEGGPNVISIVLESLRE 321

  Fly   393 SPPVPVVVCDGSGRAADLLAFVHKYASDGEEQPVLESMRDYLIGTIQKTFEVGLDQSEKLYQELL 457
            .||||||||||||||:|:::|.|||:.  ::..|.:|:||.|:.||||||....:|::::|..::
Zfish   322 DPPVPVVVCDGSGRASDIISFAHKYSE--QDGLVNDSVRDQLLVTIQKTFNYNRNQAQQIYLMVM 384

  Fly   458 QCTRNKNLITVFRIQEKPEGEAQELDQTILTALFKSQHLSPPEQLSLALTWNRVDIARSEIFVYG 522
            :|.:.:.||||||...  ||: |:::..|||||.|..:.|.|:||||||.|||||||||:|||:|
Zfish   385 ECMKKRELITVFRTAS--EGQ-QDIEMAILTALLKGTNASAPDQLSLALAWNRVDIARSQIFVHG 446

  Fly   523 QEWP-----------------------------------NGA----------------------- 529
            |.||                                   .||                       
Zfish   447 QHWPPAGSLPTSSTGQQDKPKSPIATRVSKGKPARGKKGKGAKSKPEPPEETDPRKLELLNWVNS 511

  Fly   530 LDEAMMQALEHDRIDFVKLLLENGVSMKKFLTIPRLEELYNTKHGPANTLGYILRDVRP-HIPKG 593
            |::|||.||..||:||||||:||||::..|||||||||||||:.||.|||.:::|||:. ::|..
Zfish   512 LEQAMMDALVLDRVDFVKLLIENGVNIHHFLTIPRLEELYNTRLGPINTLHFVVRDVKKGNLPPD 576

  Fly   594 YIYTLHDIGLVINKLMGGAYRSYYTRRKFRPIYAKVMNSYANACRKSSTYQYQRYAGANSLSL-- 656
            |..||.|||||:..|||||||..|||:.||.:|             ::.|..:|......|.:  
Zfish   577 YQITLIDIGLVLEYLMGGAYRCNYTRKSFRTLY-------------NNLYGLKRPKALKLLGMED 628

  Fly   657 ----VTGLLPFTS-------------EMALFEFPFNELLIWAVLTKRQQMALLMWTHGEEALAKS 704
                ..|......             |::.|::||:||::||||.|||:|||.:|..||||:||:
Zfish   629 DDPRPKGKKKMKKKKEEEIDIDVDDPEVSRFQYPFHELMVWAVLMKRQKMALFLWQRGEEAMAKA 693

  Fly   705 LVSCKLYKAMAHEAAEDDLDTEIYEELRSYAKEFESKGNKLLDFSYRQDAEKAQRLLTCELHSWS 769
            ||:||||||||||::..:|..:|.::|.:.:|:|.....:|||.||:.|...|.:|||.||.:||
Zfish   694 LVACKLYKAMAHESSRSELVDDISQDLDNNSKDFGQLAYELLDQSYKHDEHMAMKLLTYELKNWS 758

  Fly   770 NQSCLSLAVAANHRALLAHPCSQVILADLWMGGLRTRKNTNFKVILGLAMPFYIRQLDFKSKEEL 834
            |.:||.|||||.||..:||.|||::|.|:|||.||..|:...|||||:..|..|..|||::.::|
Zfish   759 NSTCLKLAVAAKHRDFIAHTCSQMLLTDMWMGCLRVGKSNGLKVILGIIFPPAILLLDFRTGDDL 823

  Fly   835 QQMPQTEEEHLENQNLDNDDSDRSQPDAEALLADTYSVRDTKVHENGKVSLTDSDTAQFREFFNL 899
            ......::|.::    |.||..:|..|....:..|....|   .|:||                 
Zfish   824 SYQNSKDKEEVK----DKDDDTKSTKDGTVSMDATSKKGD---EEDGK----------------- 864

  Fly   900 SEYNEVKQHQPLRLKKKFYEFYTAPITKFWADSIAYMFFLIMFSFTVLVKMEQMPRWQEWYSIAY 964
                  |:.:.|.:.||.|.|:.||.||||.::.||:.:|:::::.:|||||:.|..|||..|:|
Zfish   865 ------KKQKRLPVGKKIYYFFNAPYTKFWFNTTAYLVYLMLYNYIILVKMERWPSLQEWIVISY 923

  Fly   965 ITTLGFEKVREIISSEPVAITHKFSVWAWNMWNPCDGAAIILFVIGLAFRFR-ENTMDIGRVIYC 1028
            |.|||.||||:|:.|||..:..|.:||....||..|.|||..|::||..|.: |..|..||||||
Zfish   924 IITLGLEKVRQILMSEPGKLKQKINVWLEEYWNITDLAAITTFLMGLLLRLQNEPYMGYGRVIYC 988

  Fly  1029 VDSIYWYLRILNILGVNKYLGPLVTMMGKMVKNMIYFVVLLAVVLMSFGVSRQAILYPNKQPTWS 1093
            ||.|:||:|:|:|.||||||||.|.|:|||:.:|:||||::.||||||||:|||||:|:::|||.
Zfish   989 VDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVVIMLVVLMSFGVARQAILHPDEEPTWR 1053

  Fly  1094 LIKEVTFQPYFMLYGEVFAGDID-------------PPCGED------PSQPGCVTGHWVTPITM 1139
            |.:.:.:.||:|:||||||..||             |||||:      ...|.|:.|.|:||..|
Zfish  1054 LARNIFYMPYWMIYGEVFADSIDRKTRIHIYAMEINPPCGENMYDEDGKKLPPCIPGAWLTPAIM 1118

  Fly  1140 SMYLLIANILLINLLIAVFNNIFNEVNSVSHQVWMFQRFTVVMEYQQKPVLPPPFIALCHFYSLL 1204
            :.|||:|||||:|||||||||.|.||.|:|:|:|.|||:.::|.:..:||||||.|...|.|.:|
Zfish  1119 ACYLLVANILLVNLLIAVFNNTFFEVKSISNQIWKFQRYQLIMTFHDRPVLPPPLIIFSHIYIVL 1183

  Fly  1205 K----YCVRKAKGLEVQRDNGLKLFLEKDDLERLYDFEEECVEGFFHEQEIILNQSTDERVKNTT 1265
            |    .|.:|.:|....||:||||.|..::|:.||:|||:.||.:|.|:|..:..|.|||::.|:
Zfish  1184 KRLCCRCRKKQEGELDDRDHGLKLTLSAEELKSLYEFEEQNVEEYFREKEDEVQSSNDERIRITS 1248

  Fly  1266 ERVETMSQKIEDINQKENIQTATVQNIEFRLRKMEESSEQI---LSHLAVIHRFMSTHTAGADDL 1327
            :|||.||.::|::|::|:...|::|.::.||.::||.|.::   |..||.|.|.....|.....:
Zfish  1249 QRVENMSMRLEEVNEREHTMKASLQTVDLRLAQLEEFSGRMMHALERLAGIDRCDLVRTRSGSSM 1313

  Fly  1328 ---------RGSTINIPG-EMQRMRTISISDTEGGSGPGGNGGGGGGGGAIVPLGLGAGLNLNSL 1382
                     |||..:..| .:.|..   :...|.|....|.|                       
Zfish  1314 AVDQSGLLRRGSVTSADGYSLYRWH---LDAEERGDEVRGQG----------------------- 1352

  Fly  1383 QVTTRRRFNRSLTEVRPDAYIFDEGTHFEVVPLPEEPDEVVKSREALNEQVVRKASMQSEADSDI 1447
               |.||.:..:|::.|. :....|...:|:||                    :....|.:..||
Zfish  1353 ---TERRSSIGITDLNPQ-HASSYGPTLDVLPL--------------------RQRTHSSSSVDI 1393

  Fly  1448 YI--------------PVSQRPSTCETVKRTPYVTVRQDTGASTESK-DTLTPMGNNDDDQTLVG 1497
            .|              |.|...|:|:..|         |..|..||: ||.              
Zfish  1394 LISPCESFPPQDGGQNPQSPTRSSCQPTK---------DARALLESRIDTA-------------- 1435

  Fly  1498 GDNSDDATPDINFEAARHRALRQRTVSLCRRNSETYSLTGADINRSHISLNQLASL--SRRQMSL 1560
                      ::....|.::|||            |.....:.:.||.:.:|..:|  |..|..|
Zfish  1436 ----------VSHPLERAQSLRQ------------YPNEAQNNSLSHENRSQSGTLYVSMAQSKL 1478

  Fly  1561 TQ------SEPDSDKD-----------APIAQGSAHPGKSVLHAKPSRNILLKLHSEYTSITDEL 1608
            :.      |||...:|           .|......||....|..|.|        ||.....|:.
Zfish  1479 SSPGNTWASEPYGLQDQANRSPTLGRWPPRFDYKVHPSPFGLSPKTS--------SEKLRQVDDQ 1535

  Fly  1609 ESVCHMIASPTVSLPSNKASLDRPKTEMSRAEAAALLEKKHLKECE---ENDYMILEGLIESRGS 1670
            :              ....|.:..:|...:|.:    |:|:..|.|   .|:....|.:.:.|..
Zfish  1536 D--------------KEDTSKESKRTNSHQAGS----EEKNKDEDEIQANNESTKTEEVDDKREK 1582

  Fly  1671 IDASAQGFEIGVSIDYSHRYPLRRETAVELSPSKPSVDGDLM 1712
            :..|.:   :.||.|  ..||..|..::..:|.|....||::
Zfish  1583 LTDSDR---LYVSED--RMYPALRSKSLNANPRKVKAAGDVL 1619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpmNP_001097320.1 Ion_trans 951..1167 CDD:278921 127/235 (54%)
TRPM_tetra 1262..1313 CDD:293127 19/53 (36%)
trpm1aXP_017212406.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579567
Domainoid 1 1.000 422 1.000 Domainoid score I609
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1117 1.000 Inparanoid score I216
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323456at33208
OrthoFinder 1 1.000 - - FOG0002675
OrthoInspector 1 1.000 - - otm26488
orthoMCL 1 0.900 - - OOG6_101222
Panther 1 1.100 - - O PTHR13800
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X538
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1110.900

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