DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trpm and Trpm5

DIOPT Version :9

Sequence 1:NP_001097320.1 Gene:Trpm / 36694 FlyBaseID:FBgn0265194 Length:2023 Species:Drosophila melanogaster
Sequence 2:XP_017444991.1 Gene:Trpm5 / 365391 RGDID:1310620 Length:1164 Species:Rattus norvegicus


Alignment Length:1213 Identity:348/1213 - (28%)
Similarity:575/1213 - (47%) Gaps:197/1213 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 TIPGIES---GSP---GDLWLPTKHTRPQPTDAYGTIEFQGGAHPTKAQYVRLSFDTRPELLVQL 209
            |:|..:|   |||   ||.|        :|....|.:.| ||:...::::|::..:..|.:|.:|
  Rat     8 TMPMAQSSCPGSPPDTGDGW--------EPVLCKGEVNF-GGSGKKRSKFVKVPSNVAPSMLFEL 63

  Fly   210 FTKEWNLELPKLLITVQGGKANFDLQAKLKKEIRKGLLKAAKTTGAWIFTGGTNTGVTKQVGDAL 274
            ...||:|..|.|::::.|.:..|.:::.|:..:||||:|||::|||||.|...:.|:.:.||.|:
  Rat    64 LLTEWHLPAPNLVVSLVGEERLFAMKSWLRDVLRKGLVKAAQSTGAWILTSALHVGLARHVGQAV 128

  Fly   275 ---LLEGQQRTGRVVSIGIAPWGIVERNHELLGHNREVPCH---SISSPRSKLAVLNNRHAYFLL 333
               .|.......|||:||:|....:.....|.|...:.|.|   ...|.:..|..|::..::|:|
  Rat   129 RDHSLASTSTKVRVVAIGMASLDRILHRQLLDGVQEDTPIHYPADEGSTQGPLCPLDSNLSHFIL 193

  Fly   334 VDNGTQAKYG---AELILRRKLEKFISNLKLHPFTHSS--TPVVCLVIEGGTNTIRAVLEYVTDS 393
            |:.||.....   |||.|  .|||.||..:......||  .||:||::.|..:|:..:...|..:
  Rat   194 VEPGTLGSGNDGLAELQL--SLEKHISQQRTGYGGTSSIQIPVLCLLVNGDPSTLERMSRAVEQA 256

  Fly   394 PPVPVVVCDGSGRAADLLAFVHKYASDGEEQPVLESMRDYLIGTI-QKTFEVGLDQSEKL----- 452
              .|.::..|||..||:||     |..|  ||.|      |:..: :|.|.      ||.     
  Rat   257 --APWLILAGSGGIADVLA-----ALVG--QPHL------LVPQVTEKQFR------EKFPSECF 300

  Fly   453 -------YQELLQ-CTRNKNLITVFRIQEKPEGEAQELDQTILTALFKS---------QHLSPPE 500
                   :.|||| ...:.:|:||:..::  || :::||..||.||.|:         .:|   :
  Rat   301 SWEAIVHWTELLQNIAAHPHLLTVYDFEQ--EG-SEDLDTVILKALVKACKSHSRDAQDYL---D 359

  Fly   501 QLSLALTWNRVDIARSEIFVYGQEWPNGALDEAMMQALEHDRIDFVKLLLENGVSMKKFLTIPRL 565
            :|.||:.|:|||||:||||....||.:..|:|.|..||..::.|||:|.:::|..|.:|||..||
  Rat   360 ELKLAVAWDRVDIAKSEIFNGDVEWKSCDLEEVMTDALVSNKPDFVRLFVDSGADMAEFLTYGRL 424

  Fly   566 EELYNT-------------KH--GPANTLGYILRDVRPHIPKGY-IYTLHDIGLVINKLMGGAYR 614
            ::||::             ||  |.....|...:..| .:|.|. .::||::..|:...:..|.|
  Rat   425 QQLYHSVSPKSLLFELLERKHEEGRLTLAGLGAQQTR-ELPVGLPAFSLHEVSRVLKDFLHDACR 488

  Fly   615 SYYTRRKFRPIYAKVMNSYANACRKSSTYQYQRYAGANSLSLVTGLLPFTSEMALFEFPFNELLI 679
            .:                |.:..|.......:|.||..       .||..|..:  |.|:.:|.:
  Rat   489 GF----------------YQDGRRMEERGPPKRPAGQK-------WLPDLSRKS--EDPWRDLFL 528

  Fly   680 WAVLTKRQQMALLMWTHGEEALAKSLVSCKLYKAMAHEAAEDDLDTEIYEELRSYAKEFESKGNK 744
            ||||..|.:||...|..|.|.:|.:|.:||:.|.|:|...|    .|:...:|.  .::|.....
  Rat   529 WAVLQNRYEMATYFWAMGREGVAAALAACKIIKEMSHLEKE----AEVARTMRE--AKYEQLALD 587

  Fly   745 LLDFSYRQDAEKAQRLLTCELHSWSNQSCLSLAVAANHRALLAHPCSQVILADLWMGGLRTRKNT 809
            |....|....::|..||....||||..:||.||..|:.:|..||...|..|..:|.|.:.|  .|
  Rat   588 LFSECYSNSEDRAFALLVRRNHSWSRTTCLHLATEADAKAFFAHDGVQAFLTKIWWGDMAT--GT 650

  Fly   810 NFKVILG-LAMP--FYIRQLDFKSKEELQQMPQTEEEHLENQNLDNDDSDRSQPDA----EALLA 867
            ....:|| ...|  .|...:.| |::..|:|               |..|..:||:    ::.|.
  Rat   651 PILRLLGAFTCPALIYTNLISF-SEDAPQRM---------------DLEDLQEPDSLDMEKSFLC 699

  Fly   868 DTYSVRDTKVHENGKVSLTDSDTAQFREFFNLSEYNEVKQHQPLRLKKKFYEFYTAPITKFWADS 932
            .         |......||::..|.    .:|..       |...|..::.:|:.||:|.|..:.
  Rat   700 S---------HGGQLEKLTEAPRAP----GDLGP-------QAAFLLTRWRKFWGAPVTVFLGNV 744

  Fly   933 IAYMFFLIMFSFTVLVKME---QMPRWQEWYSIAYITTLGFEKVRE-IISSEPVAITHKFSVWAW 993
            :.|..||.:||:.:||...   |.|...|.....::.||..|::|: ..::|...:..||:::..
  Rat   745 VMYFAFLFLFSYVLLVDFRPPPQGPSGSEVTLYFWVFTLVLEEIRQGFFTNEDTRLVKKFTLYVE 809

  Fly   994 NMWNPCDGAAIILFVIGLAFRFRENTMDIGRVIYCVDSIYWYLRILNILGVNKYLGPLVTMMGKM 1058
            :.||.||..||.||::|:..|...:..:.||.:..:|.:.:.||:::|..::|.|||.:.::.:|
  Rat   810 DNWNKCDMVAIFLFIVGVTCRMVPSVFEAGRTVLAIDFMVFTLRLIHIFAIHKQLGPKIIIVERM 874

  Fly  1059 VKNMIYFVVLLAVVLMSFGVSRQAILYPNKQPTWSLIKEVTFQPYFMLYGEVFAGDIDPP---CG 1120
            :|::.:|:..|:|.|:::||:.||:|:|:......:.:.|.::||..::|::...:||..   |.
  Rat   875 MKDVFFFLFFLSVWLVAYGVTTQALLHPHDGRLEWIFRRVLYRPYLQIFGQIPLDEIDEARVNCS 939

  Fly  1121 EDP----SQPGC--VTGHWVTPITMSMYLLIANILLINLLIAVFNNIFNEVNSVSHQVWMFQRFT 1179
            ..|    |...|  :..:|:..:.:..:||:.|:||:|||||:|:..|..|...:...|.|||:.
  Rat   940 LHPLLLDSSASCPNLYANWLVILLLVTFLLVTNVLLMNLLIAMFSYTFQVVQGNADMFWKFQRYH 1004

  Fly  1180 VVMEYQQKPVLPPPFIALCHFYSLLKYCVRKAKGLEVQRDNGLKLFLEKD-----DLERLYDFEE 1239
            :::||..:|.|.||||.|.|...:||...||    |.|..   :..||:|     | :::..:|.
  Rat  1005 LIVEYHGRPALAPPFILLSHLSLVLKQVFRK----EAQHK---QQHLERDLPDPVD-QKIITWET 1061

  Fly  1240 ECVEGFFHEQEIILNQSTDERVKNTTERVETMSQKIEDINQKE 1282
            ...|.|....|.....|.:|.::.|..||:.:::.|..:.::|
  Rat  1062 VQKENFLSTMEKRRRDSEEEVLRKTAHRVDLIAKYIGGLREQE 1104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpmNP_001097320.1 Ion_trans 951..1167 CDD:278921 66/228 (29%)
TRPM_tetra 1262..1313 CDD:293127 5/21 (24%)
Trpm5XP_017444991.1 LSDAT_euk 47..273 CDD:423023 72/229 (31%)
trp <717..1106 CDD:273311 116/403 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166339767
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323456at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.850

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