DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trpm and trpm8b

DIOPT Version :9

Sequence 1:NP_001097320.1 Gene:Trpm / 36694 FlyBaseID:FBgn0265194 Length:2023 Species:Drosophila melanogaster
Sequence 2:XP_012825655.2 Gene:trpm8b / 100302009 XenbaseID:XB-GENE-12442826 Length:1090 Species:Xenopus tropicalis


Alignment Length:1219 Identity:330/1219 - (27%)
Similarity:555/1219 - (45%) Gaps:209/1219 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 NFQKRECIKFIPCP-KDDTKCCCGQAQITHQTIPGIESGSPGDLWLPTKHTRPQPTDAYGTIEFQ 184
            :.:|||||.|...| ..::.|.||  .:..|...|::: :..|.|..|:||:...|||||.|:|:
 Frog    39 DIKKRECIVFTQDPSSQESLCKCG--YLKRQHTEGVQT-NQNDRWNYTRHTKELSTDAYGEIQFE 100

  Fly   185 GGAHPTKAQYVRLSFDTRPELLVQLFTKEWNLELPKLLITVQGGKANFDLQAKLKKEIRKGLLKA 249
              ....:|:|:|||.||.|.:|.:|.|..|.|:.|.|:|:|.||..||.|:.:::|.||: |:..
 Frog   101 --TFGRRAKYIRLSRDTAPAILYKLMTSYWQLKTPNLIISVTGGARNFSLKPRIRKIIRR-LIYI 162

  Fly   250 AKTTGAWIFTGGTNTGVTKQVGDALL--LEGQQRTGRVVSIGIAPWGIVERNHELL---GHNREV 309
            |::.|||||||||:.|:||.:|:.:.  ...|...|:|.:||||.||::.....|:   ....:.
 Frog   163 AQSKGAWIFTGGTHNGLTKYIGEVVRDNTISQSSEGKVAAIGIAAWGMISNRDSLIRSPDDEGKY 227

  Fly   310 PCHSISSPRSK--LAVLNNRHAYFLLVDNGTQAKYGAELILRRKLEKFISNLKLHPFTHS-STPV 371
            ..|.:...:.:  |..|:|.|.:|:|||||:......|..||..||..||.|......:| ..|:
 Frog   228 IAHYVMDEKKEDGLYCLDNNHTHFILVDNGSHKHPTIEAELRASLEGCISELTAPDSDYSGKIPI 292

  Fly   372 VCLVIEGGTNTIRAVLEYVTDSPPVPVVVCDGSGRAADLLAFVHKYASDGEEQP---VLESMRDY 433
            ||.|..||..|::|:...:...  :|.||.:|||:.||::|.:  ..::|...|   :.|.|..:
 Frog   293 VCFVHSGGKETLKAINRAIKSK--IPCVVVEGSGQIADVIASL--VETEGTSVPSTIIKEKMLHF 353

  Fly   434 LIGTIQKTFEVGLDQSEKLYQELLQCTRNKNLITVFRIQEKPEGEAQELDQTILTALFKSQHLSP 498
            |..|:.:..|   |:.|...|.:.:...:.||:||.:|.|..:   :.:...|..||:|:.....
 Frog   354 LKYTVSRLTE---DELEAWIQWIKEIMESPNLLTVIKIDEAGD---ETVSDAISAALYKAYSTRE 412

  Fly   499 PE------QLSLALTWNRVDIARSEIFVYGQEWPNGALDEAMMQALEHDRIDFVKLLLENGVSMK 557
            .:      ||.|.|.||::::|.:|:|..||.|....|::||..||..||.:||:||||||:.:.
 Frog   413 LDKGNWNAQLKLLLEWNQLELANNELFANGQHWKTADLEDAMFTALVKDRPEFVRLLLENGLDLD 477

  Fly   558 KFLTIPRLEELYNTKHGPANTLGYILRDVRPHIPKGYIYTLHDIGLVINKLMGGAYRSYYTRRKF 622
            |||:...|.:|::                 .|.......:|.......|.|:...:|....   :
 Frog   478 KFLSSEVLRQLFS-----------------EHFSTHAFKSLEMADKSYNPLLTFVWRMVLV---Y 522

  Fly   623 RPIYAKVMNSYANACRKSSTYQYQRYAGANSLSLVTGLLPFTSEMALFEFPFNELLIWAVLTKRQ 687
            :|...:..|        ||.|:.|     |..||:.            ..|...|.|||:|..::
 Frog   523 QPSNKEKWN--------SSDYKIQ-----NISSLIK------------RHPTQVLFIWAILQNKR 562

  Fly   688 QMALLMWTHGEEALAKSLVSCKLYKAMAHEAAEDDLDTEIYEELRSYAKEFESKGNKLLDFSYRQ 752
            :::.::|...:.....:|.:.||.|.:    |:.:.|.:..:|....|.|:|::...|....|..
 Frog   563 ELSTVIWEQTKACTLAALGASKLLKHL----AKVNKDIKTAQESEEMAHEYETRAVDLFTECYSN 623

  Fly   753 DAEKAQRLLTCELHSWSNQSCLSLAVAANHRALLAHPCSQVILADLWMGGLRTRKNTNFKVILGL 817
            |.:.|..||.....:|...:||.:|||||.:..:|.|..|..|:..|.|.: :|....:|::|.|
 Frog   624 DKKLAGMLLVHSCEAWGKSNCLDMAVAANDQQFIAQPGVQNFLSKQWYGAI-SRDTKTWKILLSL 687

  Fly   818 AMPFYIRQLDFKSKEELQQMPQTEEEHLENQNLDNDDSDRSQPDAEALLADTYSVRDTKVHENGK 882
            .:                 .|......:..:|:.|....|..                       
 Frog   688 FI-----------------FPLISCGFITFRNISNRKRSRLW----------------------- 712

  Fly   883 VSLTDSDTAQFREFFNLSEYNEVKQHQPLRLKKKFYEFYTAPITKFWADSIAYMFFLIMFSFTVL 947
                                             |:.:|:|:|...|....|.|:.||.:|::.:|
 Frog   713 ---------------------------------KYCDFFTSPFVVFSWTVIFYIGFLFLFAYVLL 744

  Fly   948 VKMEQMPRWQEWYSIAYITTLGFEKVREIISSEPVAITHKFSVWAWNMWNPCDGAAIILFVIGLA 1012
            :..:.:|...|......:..|...::|::|.|.        :.::.:.||..|..||:.|::|:.
 Frog   745 MDFQPIPTGLEIVVYLLVFILLCIEIRQMIISR--------AEYSRDCWNIMDCMAILYFIVGVL 801

  Fly  1013 FRFRE---NTMDIGRVIYCVDSIYWYLRILNILGVNKYLGPLVTMMGKMVKNMIYFVVLLAVVLM 1074
            ||.:.   :.:.:||||.|:|.|.:.||::.|..:::.|||.:.|:.:|..::.:|:.|.||.::
 Frog   802 FRLQNSNPSALYVGRVILCLDYIIFTLRLIQIFTISQNLGPKIIMLQRMFVDVFFFLFLFAVWIV 866

  Fly  1075 SFGVSRQAILYPNKQPTWSLIKEVTFQPYFMLYGEVFAGDID-----------------PPCGED 1122
            :|||:.|.||..|:.....:.:.|.:|||..::|..|: |:|                 |.|.|.
 Frog   867 AFGVANQGILRLNEHRWEWIFRSVIYQPYLAMFGGPFS-DVDEATYDFDKCTITGNESKPLCVEV 930

  Fly  1123 PSQPGCVTGHWVTPITMSMYLLIANILLINLLIAVFNNIFNEVNSVSHQVWMFQRFTVVMEYQQK 1187
            .|:.......|:|...:|:|:|..||||:|||||:|......|...:.|||.|||:.:|.||..:
 Frog   931 DSENNPRFPEWITIPLVSVYMLSTNILLVNLLIAMFGYTVGSVQDNNEQVWKFQRYFLVQEYCSR 995

  Fly  1188 PVLPPPFIALCHFY----SLLKYCVRKAKGLEVQRDNGLKLFLEKDDLERLYDFEEECVEGFFHE 1248
            ..:|.||:...:.|    :|..:|.:|      |....|.....|:|.:.|      ..|....|
 Frog   996 ITIPFPFVIFGYIYLIMRNLFSWCYKK------QEPPPLPCCFNKEDNKTL------AWEAVMKE 1048

  Fly  1249 QEIILNQSTDERVKNTTERVETMSQKIEDINQKENIQTATVQNIEFRLR 1297
            ..::...|..:..:....|.:.:..|:.:::       :.|.::..|::
 Frog  1049 NYLVKKISETQNNREMEHRFKQLEGKLNELH-------SLVMDLTVRIK 1090

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpmNP_001097320.1 Ion_trans 951..1167 CDD:278921 69/235 (29%)
TRPM_tetra 1262..1313 CDD:293127 4/36 (11%)
trpm8bXP_012825655.2 LSDAT_euk 106..378 CDD:423023 97/279 (35%)
trp <577..1043 CDD:273311 139/564 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323456at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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