DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trpm and trpm1

DIOPT Version :9

Sequence 1:NP_001097320.1 Gene:Trpm / 36694 FlyBaseID:FBgn0265194 Length:2023 Species:Drosophila melanogaster
Sequence 2:XP_031755011.1 Gene:trpm1 / 100216447 XenbaseID:XB-GENE-492528 Length:1679 Species:Xenopus tropicalis


Alignment Length:1754 Identity:677/1754 - (38%)
Similarity:969/1754 - (55%) Gaps:324/1754 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 IRRRQRMRKRSSVSSTLSKVLILNVRDLLKAHAGSEPLKEHQPRSWIETNFQKRECIKFIPCPKD 136
            :||.....||:|:.                   ||....:...::|||..|.|||||..:...||
 Frog    23 LRRMSGSFKRTSLK-------------------GSSSGSQKGQKAWIEKTFSKRECIYVLANSKD 68

  Fly   137 DTKCCCGQAQITHQTIPGIESGSPG-----------DLWLPTKHTRPQPTDAYGTIEFQGGAHPT 190
            ..:|||||....|..:|...:|:..           :.|..:|||:..||||:|.:|||||.|..
 Frog    69 SNRCCCGQLLTQHIPVPQNATGNKNGEECKQLEAVPEKWSISKHTQLSPTDAFGILEFQGGGHSN 133

  Fly   191 KAQYVRLSFDTRPELLVQLFTKEWNLELPKLLITVQGGKANFDLQAKLKKEIRKGLLKAAKTTGA 255
            ||.|:|:|:|::|:.|:.|..|||.||||||||:|.||..||::|.|||:...|||:|||.||||
 Frog   134 KAMYIRVSYDSKPDSLLHLMVKEWQLELPKLLISVHGGLQNFEMQPKLKQVFGKGLIKAAMTTGA 198

  Fly   256 WIFTGGTNTGVTKQVGDALLLEGQQRTGRVVSIGIAPWGIVERNHELLGHNREVPCHSISSPRSK 320
            ||||||.:|||.:.|||||.....:..||:.:||||||||||...:|:|.:...|..::|:|.||
 Frog   199 WIFTGGVSTGVIRHVGDALKDHSSKSRGRICAIGIAPWGIVENKEDLIGKDVTKPYQTMSNPLSK 263

  Fly   321 LAVLNNRHAYFLLVDNGTQAKYGAELILRRKLEKFISNLKLHPFTHSSTPVVCLVIEGGTNTIRA 385
            |:|||:.|.:|:|.||||..|||||:.|||:|||.||..|::.......|||.|::|||.|.|..
 Frog   264 LSVLNSSHTHFILADNGTLGKYGAEVKLRRQLEKHISLQKINTRLGQGVPVVALIVEGGPNVITI 328

  Fly   386 VLEYVTDSPPVPVVVCDGSGRAADLLAFVHKYASDGEEQPVLESMRDYLIGTIQKTFEVGLDQSE 450
            |||.:.:.||||||||||||||:|:::|.|||:.:|  ..:.||:||.|:.||||||....:|:.
 Frog   329 VLECLREEPPVPVVVCDGSGRASDIMSFAHKYSEEG--GIISESLRDQLLVTIQKTFNYSRNQAH 391

  Fly   451 KLYQELLQCTRNKNLITVFRIQEKPEGEAQELDQTILTALFKSQHLSPPEQLSLALTWNRVDIAR 515
            :|...|::|.:.|.||||||:..  ||: |:::..|||||.|..:.|.|:||||||.||||||||
 Frog   392 QLLVVLMECMKKKELITVFRMGS--EGQ-QDIEMAILTALLKGTNASAPDQLSLALAWNRVDIAR 453

  Fly   516 SEIFVYGQEWPN----------------------------------------------------- 527
            |:|||:|..||.                                                     
 Frog   454 SQIFVFGHHWPPLGSLTAADGTTQDKDKKSPAAQPKATRGKGKGKKKGKGKEEPAEETDPRKIEL 518

  Fly   528 ----GALDEAMMQALEHDRIDFVKLLLENGVSMKKFLTIPRLEELYNTKHGPANTLGYILRDVRP 588
                .:|::|||.||..||:||||||:||||||::|||||||||||||:.||.|||.||:|||:.
 Frog   519 LNWVSSLEQAMMDALVLDRVDFVKLLIENGVSMQRFLTIPRLEELYNTRLGPPNTLHYIVRDVKK 583

  Fly   589 -HIPKGYIYTLHDIGLVINKLMGGAYRSYYTRRKFRPIYAKVMNSYANACRKSSTYQYQRYAGAN 652
             ::|..|..:|.|||||:..|||||||.:|||:.||.:|             ::.:..:|.....
 Frog   584 GNLPPDYHVSLIDIGLVLEYLMGGAYRCHYTRKTFRTLY-------------NNLFGPKRPKALK 635

  Fly   653 SLSLVTGLLPFTS------------------EMALFEFPFNELLIWAVLTKRQQMALLMWTHGEE 699
            .|.:.....|...                  |::.|::||:||::||||.|||:|||.:|..|||
 Frog   636 LLGMEDDEPPTKGKKKKKKKEEEIDMDVDDPEVSRFKYPFHELMVWAVLLKRQKMALFLWQRGEE 700

  Fly   700 ALAKSLVSCKLYKAMAHEAAEDDLDTEIYEELRSYAKEFESKGNKLLDFSYRQDAEKAQRLLTCE 764
            .:||:||:|||||:||||::|.:|..:|.::|.:.:|:|.....:|||.||:.|.:.|.:|||.|
 Frog   701 TMAKALVACKLYKSMAHESSESELVDDISQDLDNNSKDFGQLALELLDQSYKHDEQVAMKLLTYE 765

  Fly   765 LHSWSNQSCLSLAVAANHRALLAHPCSQVILADLWMGGLRTRKNTNFKVILGLAMPFYIRQLDFK 829
            |.:|||.:||.|||||.||..:||.|||::|.|:|||.||.|||...|||:|:..|..|..|:|:
 Frog   766 LKNWSNSTCLKLAVAAKHRDFIAHTCSQMLLTDMWMGRLRMRKNPGLKVIMGILFPPTILFLEFR 830

  Fly   830 SKEELQQMPQTEEEHLENQNLDNDDSDRSQPDAEALLADTYSVRDTKVHENGKVSLTDSDTAQFR 894
            |:::|..  .|.:|:.|.:..::::.|.:        |||.|.:..:  |||.            
 Frog   831 SQDDLSF--HTSKEYEEGKEKEDENMDGN--------ADTTSRKGDE--ENGN------------ 871

  Fly   895 EFFNLSEYNEVKQHQPLRLKKKFYEFYTAPITKFWADSIAYMFFLIMFSFTVLVKMEQMPRWQEW 959
                       ::.:.:.:..|.||||.|||.|||..:|:|:.:|::|::.:|||||:.|..|||
 Frog   872 -----------RKQKSIPIGTKIYEFYNAPIVKFWFYTISYLAYLMLFNYVILVKMERWPSVQEW 925

  Fly   960 YSIAYITTLGFEKVREIISSEPVAITHKFSVWAWNMWNPCDGAAIILFVIGLAFRFRENT-MDIG 1023
            ..|:||.||..||||||:.|||..::.|..||....||..|..||.:|:||...|.:... |..|
 Frog   926 VVISYIVTLALEKVREILMSEPGKLSQKVKVWLQEYWNITDLVAISVFLIGAILRLQNQPYMGYG 990

  Fly  1024 RVIYCVDSIYWYLRILNILGVNKYLGPLVTMMGKMVKNMIYFVVLLAVVLMSFGVSRQAILYPNK 1088
            |||||||.|:||:|:|:|.||||||||.|.|:|||:.:|:|||:::.||||||||:|||||:|::
 Frog   991 RVIYCVDIIFWYIRVLDIFGVNKYLGPYVMMIGKMMIDMLYFVIIMLVVLMSFGVARQAILHPDE 1055

  Fly  1089 QPTWSLIKEVTFQPYFMLYGEVFAGDID-------PPCGED------PSQPGCVTGHWVTPITMS 1140
            :|:|.|.:.:.:.||:|:||||||..||       |||||:      ...|.|:.|.|:||..|:
 Frog  1056 EPSWRLARNIFYMPYWMIYGEVFADQIDLYAMEINPPCGENLYDEDGKRLPPCIPGAWLTPALMA 1120

  Fly  1141 MYLLIANILLINLLIAVFNNIFNEVNSVSHQVWMFQRFTVVMEYQQKPVLPPPFIALCHFYSLLK 1205
            .|||:|||||:|||||||||.|.||.|:|:|||.|||:.::|.:..:||||||.|...|.|.:||
 Frog  1121 CYLLVANILLVNLLIAVFNNTFFEVKSISNQVWKFQRYQLIMTFHDRPVLPPPMIIFSHLYIILK 1185

  Fly  1206 ----YCVRKAKGLEVQRDNGLKLFLEKDDLERLYDFEEECVEGFFHEQEIILNQSTDERVKNTTE 1266
                .|.:..:|.:.:||.||||||..::|::||:|||:|||.:|.|:|.....|.|||::.|:|
 Frog  1186 RICCRCKKIQEGDQDERDRGLKLFLNDEELKKLYEFEEQCVEEYFQEKEDEQQSSNDERIRVTSE 1250

  Fly  1267 RVETMSQKIEDINQKENIQTATVQNIEFRLRKMEESSEQILSHLAVIHRFMSTHTAGADDLRGST 1331
            |||.||.::|::|::|:...|::|.::.||.::||.|.::::.|        ...||.|  :...
 Frog  1251 RVENMSMRLEEVNEREHFMKASLQTVDLRLSQLEELSGRMVNAL--------ERLAGID--KSEL 1305

  Fly  1332 INIPGEMQRMRTISISDTEGGSGPGGNGGGGGGGGAIVPLGLGAGLNLNSLQVTTRRRFNRSLTE 1396
            ||     :|.|..|:.|                  |...|..|   ::||...|:..:::....|
 Frog  1306 IN-----ERSRASSVCD------------------AAFLLRQG---SVNSSDGTSVYKYHVETDE 1344

  Fly  1397 V---------------RPDAYIF-------DEGTHFEVVPLP-----EEPDEVVKSREALNEQVV 1434
            |               |..||.|       ::....::||..     ......|.:::| |:..:
 Frog  1345 VTCDESTGSISPALGLRRKAYSFGMRTEKGEQDNKAQLVPRQASLRYASSANAVATKDA-NKVTL 1408

  Fly  1435 RKASMQSEADS--DIYIP-------VSQRPSTCETVKRTPYVTVRQDTGASTESKDTLTPMGNND 1490
            ...|..|...|  ||:||       :::.||| :.:.:|..||..|..|..||...:.....:..
 Frog  1409 GIVSKSSRPISCVDIWIPECDKKETINESPST-QHLSQTDIVTNCQSEGEVTEVSKSEFANSHLT 1472

  Fly  1491 DDQTLVGGDNSDDATPDINFEAARHRALR----------QRTVSLCRR--NSETYSLTGADINRS 1543
            .::|.:      :||  |:|...|.:|::          |.|::..|.  .:|...|.|...|.:
 Frog  1473 VERTKL------EAT--ISFPLERSKAMKYYSGQSFNTCQTTMTKSRSFVFTEGGKLVGGVNNWT 1529

  Fly  1544 HIS--LNQLASLS---------------RRQMS------------------LTQSEPDSDKDAPI 1573
            ..|  ::|::..|               |:|..                  ||.:|.||| ....
 Frog  1530 EYSTIIDQVSPTSLEEWTDQWNNQGDSPRKQSPELATIISEAEIQAELKPLLTDTEDDSD-IGET 1593

  Fly  1574 AQGSAHPGKSVLHAKPSRNILL------------KLHS---EYTSITDELESVCHMIASPTVSL 1622
            ...:::|.......|...::.|            .|||   :..|:.|:||...|  ||..:::
 Frog  1594 GNSASYPCTERTETKNLLSVQLDRTCGFSSPRSKSLHSHTGKSRSLIDKLERPGH--ASSVMNI 1655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpmNP_001097320.1 Ion_trans 951..1167 CDD:278921 123/229 (54%)
TRPM_tetra 1262..1313 CDD:293127 18/50 (36%)
trpm1XP_031755011.1 LSDAT_euk 135..400 CDD:407971 142/266 (53%)
trp <890..1196 CDD:273311 157/305 (51%)
PRK12704 1211..>1324 CDD:237177 45/145 (31%)
TRPM_tetra 1242..1296 CDD:406826 21/61 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 408 1.000 Domainoid score I685
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1172 1.000 Inparanoid score I201
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323456at33208
OrthoFinder 1 1.000 - - FOG0002675
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR13800
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X538
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.160

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