DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trpm and trpm2

DIOPT Version :9

Sequence 1:NP_001097320.1 Gene:Trpm / 36694 FlyBaseID:FBgn0265194 Length:2023 Species:Drosophila melanogaster
Sequence 2:XP_031749423.1 Gene:trpm2 / 100124999 XenbaseID:XB-GENE-996775 Length:1491 Species:Xenopus tropicalis


Alignment Length:1696 Identity:464/1696 - (27%)
Similarity:754/1696 - (44%) Gaps:302/1696 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 RMRKRSSVSSTLSKVLILNVRDLLKAHAGSEPLKEHQPR---SWIETNFQKRECIKFI--PCPKD 136
            |.::.:.|.|.|.     :...:.:..|...||.|.:..   |||..|.:|:||:.|:  ||..|
 Frog    15 RFKRIADVVSNLK-----HTNKIRRKAARFSPLAEQKQENLSSWISENIKKKECVYFVKNPCISD 74

  Fly   137 DTK--CCCGQAQITHQTI---PGIESGSPGDLWLPTKHTRPQPTDAYGTIEFQGGAHPTKAQYVR 196
            ..|  |.||..:..|..:   |  :|.....||...:|.:..||||:|.|.|.|.......||||
 Frog    75 LRKNVCMCGYTKDQHMDMAIRP--QSFESKVLWDFKEHIKEVPTDAFGDISFIGLGPRVGKQYVR 137

  Fly   197 LSFDTRPELLVQLFTKEWNLELPKLLITVQGGKANFDLQAKLKKEIRKGLLKAAKTTGAWIFTGG 261
            :|.||..::|.||.|:.|.||:|.|||:|.||..||.:|.:||...|:||:|||:||||||.|||
 Frog   138 VSSDTPSDVLYQLMTEHWGLEVPSLLISVTGGAKNFRMQMRLKNIFRRGLVKAAQTTGAWIITGG 202

  Fly   262 TNTGVTKQVGDAL--LLEGQQRTGRVVSIGIAPWGIVERNHELLGHNREVPCHSI--SSPRSKLA 322
            ::.||.||||:|:  ...|..:...:|:||||.||||.....|:......|...:  ...:..|:
 Frog   203 SHAGVMKQVGEAVRDYSFGSIKDSEIVTIGIATWGIVHNRRSLISATGAFPADYLLEEENQGNLS 267

  Fly   323 VLNNRHAYFLLVDNGTQAKYGAELILRRKLEKFISN---------LKLHPFTHSSTPVVCLVIEG 378
            .|:|.|::|:|||:||..|||.|::||.|||||||.         :|:        |:||:|:||
 Frog   268 CLDNNHSHFILVDDGTNGKYGVEILLRAKLEKFISEQTTEKGGVAIKI--------PIVCVVLEG 324

  Fly   379 GTNTIRAVLEYVTDSPPVPVVVCDGSGRAADLLAFV-HKYASDGEEQPVLESMRDYLIGTIQKTF 442
            |..|:..:...:.::  .|.|:.:||||.||::|.| |...|......:.|.:|.....|.....
 Frog   325 GPGTLDTIYNAIRNN--TPCVIVEGSGRVADVIAQVAHLPISKITISLIQEKIRTLFPDTFDTFT 387

  Fly   443 EVGLDQSEKLYQELLQCTRNKNLITVFRIQEKPEGEAQELDQTILTALFKSQ-------HLSPPE 500
            |..:....|..|:::   ||..|:|:|::.   :.:..::|..||.||.|:.       |.:...
 Frog   388 EYKIADWTKKIQDIM---RNNQLLTIFQVD---KDDQHDIDFAILQALLKASLSHDQQGHENWDH 446

  Fly   501 QLSLALTWNRVDIARSEIFVYGQEWPNGALDEAMMQALEHDRIDFVKLLLENGVSMKKFLTIPRL 565
            ||.||:.||||||||||||....:|....|...|..||..::.|||||.||.||.::::.|...:
 Frog   447 QLKLAVAWNRVDIARSEIFTDELQWKPSDLHPLMTAALIGNKPDFVKLFLEQGVRLEEYATQETI 511

  Fly   566 EELYNTKHGPA----NTLGYILRD--VRPHIPKGYIYTLHDIGLVINKLMGGAYRSYYTRRKFRP 624
            ..|||.. .|:    :.|..:..|  :|....|.:...||.:..|:.:|.|.     :|:.    
 Frog   512 INLYNNT-DPSCLFHSKLAKVFEDERLRLETSKSFKLQLHHVSQVLRELFGD-----FTKH---- 566

  Fly   625 IYAKVMNSYANACRKSSTYQYQRYAGANSLSL---VTGLLPFTSEMALFEFPFNELLIWAVLTKR 686
            :|.|..||...:...:..:......|....|.   ..|..|.|.:      |..:||||.|:..|
 Frog   567 LYPKPKNSEKPSVSIAVPHMKINVQGVTLRSFHKRSQGRAPCTMD------PIRDLLIWCVVQNR 625

  Fly   687 QQMALLMWTHGEEALAKSLVSCKLYKAMAHEAAEDDLDTEIYEELRSYAKEFESKGNKLLDFSYR 751
            :::|.::|:...:.:|.:|...||.|.::.|  |:|.||.  ||:.:.|:|||.:...:....||
 Frog   626 KEVAEIIWSQCHDCIAAALACSKLLKELSKE--EEDTDTS--EEMLALAEEFEQRAIGIFTECYR 686

  Fly   752 QDAEKAQRLLTCELHSWSNQSCLSLAVAANHRALLAHPCSQVILADLWMGGLRTRKNTNFKVILG 816
            :|.|:|.:||.....:|...:.|.||:.|.....::|...|..|..:|.|.|.........:|..
 Frog   687 KDEERALKLLIRVSEAWGKTTSLKLALEAKDMKFVSHGGVQAFLTRVWWGELCVDNGIWRVIICM 751

  Fly   817 LAMP-FYIRQLDFKSKEELQQMPQTEEEHLENQNLDNDDSDRSQPDAEALLADTYSVRDTKVHEN 880
            |..| .|.|.:.|                            |:.|.|                  
 Frog   752 LFFPLIYTRFITF----------------------------RTTPCA------------------ 770

  Fly   881 GKVSLTDSDTAQFREFFNLSEYNEVKQHQPLRLKKKFYEFYTAPITKFWADSIAYMFFLIMFSFT 945
                                    .|:.|.....::...|:.|||..|..:.::|..||::|::.
 Frog   771 ------------------------AKKMQATTFSERLQAFFMAPIVIFHLNILSYFGFLLLFAYV 811

  Fly   946 VLVKMEQMPRWQEWYSIAYITTLGFEKVREII-SSEPVAITHKFSVWAWNMWNPCDGAAIILFVI 1009
            :::..:..|.|:|.....::.:...|:||::: ..:......:.|::..:.||..|..|||:|::
 Frog   812 LMINFQPFPSWRELVIYVWLFSFVCEEVRQVVYDPDGFGFLRQASIYINDFWNKLDLCAIIIFIV 876

  Fly  1010 GLAFRFRENTMDIGRVIYCVDSIYWYLRILNILGVNKYLGPLVTMMGKMVKNMIYFVVLLAVVLM 1074
            ||..|.:..|:..||:|..:|.:.:.||:::|..::|.|||.:.::.:|:|::.:|:.||||.::
 Frog   877 GLICRSQPATLYSGRIILSLDFVIFCLRLMHIFTISKTLGPKIIIVKRMMKDVFFFLFLLAVWVV 941

  Fly  1075 SFGVSRQAILYPNKQPTWSLIKEVTFQPYFMLYGEV--------FAGDIDPPCGEDPSQPGC--- 1128
            ||||::||||..|:.....:.:.|.:..|..|:|::        ::.|.....|.||::..|   
 Frog   942 SFGVAKQAILIHNEVRVDWIFRGVVYHSYMTLFGQIPSYIDGVNYSPDQCTLNGTDPNKQKCPET 1006

  Fly  1129 ------VTGHWVTPITMSMYLLIANILLINLLIAVFNNIFNEVNSVSHQVWMFQRFTVVMEYQQK 1187
                  |...|:|.|.:..|||..||||:|||||:||..|.:|...:.|:|.|||..::.||..:
 Frog  1007 NETNQPVFPQWLTVILLCFYLLFTNILLLNLLIAMFNYTFQQVQEHTDQIWKFQRHDLIEEYHGR 1071

  Fly  1188 PVLPPPFIALCHFYSLLKYCVRKAKGLEVQRDNGLKLFLEKDDLERLYDFEEECVEGFFHEQEII 1252
            |..|||||...|.|..:|..:.......:::   ||..|||::...|..:|....|.:....:..
 Frog  1072 PPAPPPFILCSHMYLFIKQVILHEPAGRLKQ---LKEKLEKNEEAALLSWETYLKENYLQNYQHF 1133

  Fly  1253 LNQSTDERVKNTTERVETMSQKIEDINQKENIQTATVQNIEFRLRKMEESSEQILSHLAVIHRFM 1317
            ..||||:|:|:|:|:|.::.:.:| :.|.:  :|..::|   ||..:||.:.:....|..|...:
 Frog  1134 QKQSTDQRIKDTSEKVASVLEMLE-LEQAK--RTGLMEN---RLLFLEEQALRSAKALNWIVNTL 1192

  Fly  1318 STHTAGADDLRGSTINIPGEMQRMRTISISDTEGGSGPGGNGGGGGGGGAIVPLGLGAGLNLNSL 1382
            ..:..|:.|.....::     .:.....:.|||.                 |.:         ..
 Frog  1193 LENGFGSKDSAPVIVS-----SKFNVTDLGDTED-----------------VKI---------QT 1226

  Fly  1383 QVTTRRRFNRSLTEVR---PDAYIFDEGTHFEVVPLPEEPDEVVKSREALNEQVVRKASMQSEAD 1444
            .|..|..:......:|   ||..:..| .||::...|             ....|||       |
 Frog  1227 HVIARNIWYPDSNIIRFPVPDEKVSWE-VHFKIYNPP-------------FYTAVRK-------D 1270

  Fly  1445 SDIYIPVSQRPSTCETVKRTPYVTV-----RQDTGASTESKDTL--TPMGNNDDDQTLVGGDNSD 1502
            ...|.|.:   .:.:.:.:..|.|:     ||...|:.|.||.|  .|:|...    |.|..:..
 Frog  1271 KKYYDPFN---DSMQALSKISYNTMDGNINRQSFCATYEVKDGLPMNPVGRTG----LKGRGSLC 1328

  Fly  1503 DATPDINFEAARHRALRQRTVSLCRRNSETYSLTGADINRSHISLNQLASLSRRQMSLTQSEPDS 1567
            ...|:....:...:..|.:..|:||:             ||...|..|...|:            
 Frog  1329 WFGPNHALHSIITKLRRNKDGSICRK-------------RSKKMLETLVIKSK------------ 1368

  Fly  1568 DKDAPIAQGSAHPGKSVLHAKPSRNILLKLHSEYTSITDELESVCHMIASPTVSLPSNKASLDRP 1632
                 :::..|.||.|:   :|...:..||.....|  |.|.:...|:..   .:...|..:|.|
 Frog  1369 -----LSENWALPGGSM---EPGEALPYKLRKILKS--DFLSTFQSMLKK---GIEVYKGYVDDP 1420

  Fly  1633 K-TEMSRAEAAAL------LEKKHLKECEEN------DYMILEGLIESRGSIDASAQGFEIGVSI 1684
            : |:.:..|..|:      |:...|...|:|      |..:...:::.:..:.|:.:.. :..::
 Frog  1421 RNTDNAWIETTAVSLHFDNLDDLQLYALEQNLQIHHQDIFVRWQVVDQKIPLYANHKDI-LQKAV 1484

  Fly  1685 DYSHRY 1690
            ||.|.|
 Frog  1485 DYHHAY 1490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpmNP_001097320.1 Ion_trans 951..1167 CDD:278921 74/233 (32%)
TRPM_tetra 1262..1313 CDD:293127 13/50 (26%)
trpm2XP_031749423.1 LSDAT_euk 134..356 CDD:423023 100/231 (43%)
trp <709..1086 CDD:273311 118/446 (26%)
Ion_trans 798..>974 CDD:395416 51/175 (29%)
Nudix_Hydrolase 1314..1487 CDD:412381 38/215 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D323456at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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