DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS4 and YJL132W

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:NP_012403.1 Gene:YJL132W / 853309 SGDID:S000003668 Length:750 Species:Saccharomyces cerevisiae


Alignment Length:611 Identity:120/611 - (19%)
Similarity:204/611 - (33%) Gaps:219/611 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 PRANSSLEAQRN------------------------ISEPGVIFRCYFESGNNCSPYNIDTKGNY 99
            ||....:|..||                        ||| |.:||    |..|....||     |
Yeast   192 PREEDLMEIIRNAGLSKEKLSYAELEFCVKRGMAAAISE-GYLFR----SQRNQLLTNI-----Y 246

  Fly   100 KGMP--NDGLLTAKNKDFRWLGGAMDGGTRDSDKFLV-----CAPRFYSINNENDYNNG------ 151
            ...|  ||.:|.      .||||..:         ||     |.|.|.::.::.:.|..      
Yeast   247 STSPRANDLILN------HWLGGQSN---------LVAMLQRCVPFFETLFHDENTNEAQAEELR 296

  Fly   152 MCYWLSD-TPKNIDSTEVMEKWPLRIEKKQVLKLADTNLIPYYSMGELGLSAHVS---DDNSKLL 212
            :|..|.. :.|.|::..::.....|.....::      :.|..|..:.|.|..:.   :||...|
Yeast   297 LCANLPPVSQKRINARPLVSSLKARKGNSHIV------VSPMKSFSDFGTSLTMGKFREDNKDYL 355

  Fly   213 MGAPGIDQWKGSVHLKQEVP-SIKTSSGRQRRGMNTNRKCNECNPEPKNFGQEEFSYFG-----Y 271
            ..:..::...|::::   || .|.|.:          ||             |:||...     |
Yeast   356 AVSAPLEDTVGAIYI---VPWDILTVA----------RK-------------EDFSILQPITAMY 394

  Fly   272 AVSSGYFDSSNLSTVLYVATAPRG----NNQFGEAYIFDIYEDSIYKYHEFRGNHFGEYFGYSVL 332
            ....|.:.:|::.   |:..:..|    :..|....|..|.:::..:.|:.:....|.::     
Yeast   395 GSKVGTYKASDVD---YLLVSQPGTCTIDFYFKGVKILTIKDETTEEAHQLQFAVTGNFY----- 451

  Fly   333 AEDLNGDGKTDVIISAPLYALRNSYDDGAIYVFINKGSFTFEERIIRSPAGSGGRFGTTLSRI-G 396
                 .|...|:::|:|.|..    ::..|..||...|      ||.....|.......:|.. |
Yeast   452 -----DDKIPDLVVSSPSYGA----NETGIATFIPGSS------IISYLTNSDKYQVVDISTFKG 501

  Fly   397 DINKDGYNDVAVGAPF-----------------------AGNGSVFIYLGSENGLRD---P---- 431
            .||.|||   .:..||                       ...|:||:|  |.|.|.|   |    
Yeast   502 VINLDGY---PMKIPFQHFGATIQISDTTDKQKLIYITCQSLGTVFVY--SSNDLHDLSIPIYYI 561

  Fly   432 ------PSQCLD------APSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLY-- 482
                  |::..|      .||::...:|:.::....        .|.:..|:..|..:.|::|  
Yeast   562 TKNGVIPAKDSDHVEWHIIPSKEHGMFGAAIYSWNF--------EGMSFVAVSQPMFDTVFIYIE 618

  Fly   483 ---RAYPVVKIHAIIKPKLQNV----------NPEEERV---------------NITVCYRLSSK 519
               :....:|:...||.|..::          |.||:::               .|::...|.:.
Yeast   619 KSGQIEFFLKLVLKIKTKSDSIPDEFGSSLLFNDEEKKLYVSSPGSFDARGSIWKISMDELLKAG 683

  Fly   520 SDSKAKALMEQEL--VIRIDIDTKSK 543
            :|.|.|.|:...|  ::.|:.|..||
Yeast   684 NDPKRKTLLINNLRHLMLINPDKSSK 709

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 19/73 (26%)
Int_alpha 384..434 CDD:214549 20/86 (23%)
Int_alpha 447..>492 CDD:214549 7/49 (14%)
Integrin_alpha2 484..808 CDD:285619 18/87 (21%)
YJL132WNP_012403.1 Zn_dep_PLPC 35..234 CDD:395710 9/42 (21%)
Int_alpha 334..>374 CDD:214549 9/42 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S7104
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.950

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