DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ItgaPS4 and ITGA10

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:XP_016858111.1 Gene:ITGA10 / 8515 HGNCID:6135 Length:1181 Species:Homo sapiens


Alignment Length:926 Identity:208/926 - (22%)
Similarity:357/926 - (38%) Gaps:252/926 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   195 MGELGLSAHVSDDNSKLLMGAPGIDQWKGSV------H--------LKQEVPSIKTSSGRQRRGM 245
            |.::|.|.|...|.  :|.|..|...|.|||      |        |:.|.|             
Human   386 MSQIGFSTHRLKDG--ILFGMVGAYDWGGSVLWLEGGHRLFPPRMALEDEFP------------- 435

  Fly   246 NTNRKCNECNPEPKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQFGEAYIFDIYED 310
                      |..:|..    :|.||:|||........   |:::.|||..:: |:...|.:.:|
Human   436 ----------PALQNHA----AYLGYSVSSMLLRGGRR---LFLSGAPRFRHR-GKVIAFQLKKD 482

  Fly   311 SIYKY-HEFRGNHFGEYFGYSVLAEDLNGDGKTDV-IISAPLYALRNSYDDGAIYVFI--NKGSF 371
            ...:. ...:|...|.|||..:...|.:.||.||| :::||::....:.:.|.:||::  .:...
Human   483 GAVRVAQSLQGEQIGSYFGSELCPLDTDRDGTTDVLLVAAPMFLGPQNKETGRVYVYLVGQQSLL 547

  Fly   372 TFEERIIRSPAGSGGRFGTTLSRIGDINKDGYNDVAVGAPF--AGNGSVFIYLGSENGLRDPPSQ 434
            |.:..:...|. ...|||..:..:.|:|:||:.|||||||.  ...|::::|.|:::|:|..|:|
Human   548 TLQGTLQPEPP-QDARFGFAMGALPDLNQDGFADVAVGAPLEDGHQGALYLYHGTQSGVRPHPAQ 611

  Fly   435 CLDAPSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKIHAIIKPKLQ 499
            .:.|.|...:.  || ||..:....|:||:...|.|:||..  |..|..:.|:|.    :.|.|:
Human   612 RIAAASMPHAL--SY-FGRSVDGRLDLDGDDLVDVAVGAQG--AAILLSSRPIVH----LTPSLE 667

  Fly   500 NVNPE-------------EERVNIT--VCYRLSSKSDSKAKALMEQELVIRI--DIDTKSKIKLA 547
             |.|:             :|.|.:|  :|::::|::..:    .:.:..:|.  .:|..:....|
Human   668 -VTPQAISVVQRDCRRRGQEAVCLTAALCFQVTSRTPGR----WDHQFYMRFTASLDEWTAGARA 727

  Fly   548 VFDEEHGSQMSFKAKAFHEEI----CSEFQIE-MDKRAKFTPIALEMQYEL---SKKIPNSGDFC 604
            .||   ||......:.....:    |.:.... :|......|:||.:.:.|   :|..|      
Human   728 AFD---GSGQRLSPRRLRLSVGNVTCEQLHFHVLDTSDYLRPVALTVTFALDNTTKPGP------ 783

  Fly   605 EDCAVVDPAEPKFVTEYITFNTGCATD-VCVADLKISCIN-------ASSTLVLGTTAVLRLTYN 661
                |::...|..:.:.:.|:..|..| .||.||.:. :|       .:..:|.|....:.::..
Human   784 ----VLNEGSPTSIQKLVPFSKDCGPDNECVTDLVLQ-VNMDIRGSRKAPFVVRGGRRKVLVSTT 843

  Fly   662 ITNNGEFAYHPKFSVTNSAGLSLAQ--------VPGNCKVNEA-VMVCDLNHG--QRMAKGDTDS 715
            :.|..|.||:...|:..|..|.||.        :...|....| ..:|.:.|.  |..|| .|..
Human   844 LENRKENAYNTSLSLIFSRNLHLASLTPQRESPIKVECAAPSAHARLCSVGHPVFQTGAK-VTFL 907

  Fly   716 LTISFDVRQLRGRSLEIQAEV-LSARDESNPENNKLTNVLSLREKADIYVSGVQTNDHVVLKESP 779
            |...|..     .||..|..| |:|..:|...|..|                 |.|         
Human   908 LEFEFSC-----SSLLSQVFVKLTASSDSLERNGTL-----------------QDN--------- 941

  Fly   780 YTAEVVNYYEIKSH----GPSTLENLTVSLY--IPVA----YKTPDSTNVKHIVTSSPKIQSKYA 834
             ||:...|.:.:.|    ..|||....|..|  :||.    :||            :.::|:...
Human   942 -TAQTSAYIQYEPHLLFSSESTLHRYEVHPYGTLPVGPGPEFKT------------TLRVQNLGC 993

  Fly   835 HKIMPINFIDQNNALANNFAIDHDQSTLLFSA-TPQHENVGN----LSGIVEQNPSISLLN---- 890
            :.:                      |.|:.|| .|...:.||    ||.::..|.|..:.|    
Human   994 YVV----------------------SGLIISALLPAVAHGGNYFLSLSQVITNNASCIVQNLTEP 1036

  Fly   891 -------EDLPVNNTL--------VLNC------QDTNVTLCVPVEIRLENGLQLKPEELMNMTV 934
                   |:|...|.|        |:.|      :.|.|::.:   :||.:....:..:..::||
Human  1037 PGPPVHPEELQHTNRLNGSNTQCQVVRCHLGQLAKGTEVSVGL---LRLVHNEFFRRAKFKSLTV 1098

  Fly   935 SFTVNLKDADDIWEYFVIQTDLKVHKIGDPTLSSFTIEKKIESNVICKHAEIAIWKIIVSVIVGI 999
            ..|..|...:.           .|.::.:.:..|.::.:.:::..|.    |::|.:|.||:.|:
Human  1099 VSTFELGTEEG-----------SVLQLTEASRWSESLLEVVQTRPIL----ISLWILIGSVLGGL 1148

  Fly  1000 LVFSAATYALYKRGFF 1015
            |:.:...:.|:|.|||
Human  1149 LLLALLVFCLWKLGFF 1164

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 22/75 (29%)
Int_alpha 384..434 CDD:214549 20/51 (39%)
Int_alpha 447..>492 CDD:214549 15/44 (34%)
Integrin_alpha2 484..808 CDD:285619 77/374 (21%)
ITGA10XP_016858111.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141983
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.