DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS4 and itga11b

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:XP_695559.7 Gene:itga11b / 567175 ZFINID:ZDB-GENE-071009-4 Length:1219 Species:Danio rerio


Alignment Length:1113 Identity:238/1113 - (21%)
Similarity:413/1113 - (37%) Gaps:316/1113 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    92 NIDTKGNYKGMPNDGLLTAKNKDFRWLGG----------AMDGGTRDSD---------------- 130
            |||.:|..:.....|:..|:.:.|:. ||          ..||.:.||.                
Zfish   267 NIDQRGGEETRTALGINVARTQAFKH-GGRPDAKKVMIVITDGESHDSPDLKAAVEESEKDNITL 330

  Fly   131 -----------------------KFLVCAP--RFYSINNENDYNNGMCYWLSDTPKNIDSTEVME 170
                                   ||:...|  .|:|:.:|:.        |.|.   :|:.    
Zfish   331 YGIAVLGYYNRRGINPEAFLREIKFIATDPDEHFFSVTDESA--------LKDI---VDAL---- 380

  Fly   171 KWPLRIEKKQVLKLADTN-------LIPYYSMGELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLK 228
                   .:::..|..||       |    .|.:.|.|:|:.:|.  :|:||.|...|.|:| ||
Zfish   381 -------GEKIFSLEGTNQNGTAFGL----QMSQAGFSSHIVEDG--ILVGAVGAYDWNGAV-LK 431

  Fly   229 QEVPSIKTSSGRQRRGMNTNRKCNECNPEPKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAP 293
            :      |..|:.....::..|  |...|.||.|    :|.||.|||..   |.....||||.||
Zfish   432 E------TRHGKVIPPKSSYMK--EFPEELKNHG----AYLGYMVSSVV---SAHHGQLYVAGAP 481

  Fly   294 RGNNQFGEAYIFDIYEDS----IYKYHEFRGNHFGEYFGYSVLAEDLNGDGKTD-VIISAPLYAL 353
            |.|:. |:..||.:....    :|..:   |...|.|:|..:...|::.||.|| :::.||:|..
Zfish   482 RFNHT-GKVVIFTLTNSGNLTILYSLY---GKQIGSYYGSELAPIDVDDDGLTDLLLVGAPMYFY 542

  Fly   354 RNSYDDGAIYVFI--NKGSFTFEERIIRSPAGSGGRFGTTLSRIGDINKDGYNDVAVGAPFAGN- 415
            | .::.|.:|::.  .:|||..:..:..|......|||..:|.:.|:|.||::::.||||...| 
Zfish   543 R-GWEKGKVYIYTVGLQGSFIPDGTLGPSEHSHDSRFGAAMSALPDLNGDGFSELVVGAPLEDNH 606

  Fly   416 -GSVFIYLGSENGLRDPPSQCLDAPSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAV 479
             |:::::.|.:|.::....|.:......|   |...||..:....|::|:|..|.::|:..|..:
Zfish   607 RGAIYLFYGLKNSIQTKYKQRISGIELAP---GLRYFGRSVHGMMDLNGDGLVDLSVGSFGAAVL 668

  Fly   480 YLYRAYPVVKIHAIIKPKLQNV--------NPEEERVNITVCYRLSSK---SDSKAKALMEQELV 533
            ...|:...|.|....:|...||        ..|...:..|||..::::   :|.|..||.     
Zfish   669 LWSRSVVRVGIGVHFEPSKINVFNKDCIRGGREVSCMLATVCLNVTARTPMTDPKRVALR----- 728

  Fly   534 IRIDIDTKSKIKLAVFDE-EHGSQMSFKAKAFHEEICSEFQIEMDKRAKFT-PIALEMQYELSKK 596
            .....:.......||.|. |....::.:..|.|   |.:....:.:...:| |:...:...|.: 
Zfish   729 YSFGFEETGYFPRAVLDSTEESRDVTLRPAAQH---CQQLHFHVHEVTDYTRPLTFTVNVGLQR- 789

  Fly   597 IPNSGDFCEDCAVVDPAEPKFVTEYITFNTGCAT-DVCVADLKIS-------------------- 640
                   .::..|:|...|..:...:.|..||.. |.||.:|.:.                    
Zfish   790 -------ADEGPVLDDGWPTSLRSELPFWNGCDNDDQCVPNLILQSSSDLLDLREFCSRDERSSW 847

  Fly   641 --CINASS-----TLVLGTTAVLRLTYNITNNGEFAYHPKFSVTNSAGLSLA------------Q 686
              |::.||     .||..:...:.:..::.|.||.||:....:|:|..|..:            :
Zfish   848 PPCVDQSSIKTPERLVESSRRKVVVETHLENRGENAYNSILHITHSPNLHFSSLVVKAPSDIAIE 912

  Fly   687 VPGN--------CKVNEAVMVCDLNHGQRMAKGDTDSLTISFDVRQLRGRSLEIQAEVLSARDES 743
            .|.:        |.|:...|........|:....:.|:.:::         :.|...|.|..:|.
Zfish   913 CPNSDDTSLYRTCNVSAPFMRASAQVYFRLEFEFSRSVFLNY---------VNISLRVSSEGEEM 968

  Fly   744 NPENNKLTNV-LSLREKADIYVSGVQTNDHVVLKESPYTAEVVNYYEIKSHGPSTLENLTVSLYI 807
            .||:| :.|: .:||.:||:    :.|.|     .||      :.:|||   |...::::|.   
Zfish   969 FPEDN-VNNIHHNLRYEADL----LFTRD-----SSP------SRFEIK---PEQAQSVSVG--- 1011

  Fly   808 PVAYKTPDSTNVKHIVTSSPKIQSKYAHKIMPINFIDQNNALANNFAIDHDQSTLLFSATPQHEN 872
                             |.|.....|..:.:.:..:.:.....|.||:....:|||         
Zfish  1012 -----------------SGPPFNLSYQIQNLGLFPVSELLFTLNVFAVTRKANTLL--------- 1050

  Fly   873 VGNLSGI-VEQNP------------SISLLNEDLPVNNTLVLNCQDTNVTLCVPVEIRLENGLQL 924
              :||.: ::|.|            ..|...|||.:|..:..:..|..:..|         ...|
Zfish  1051 --HLSDLYIQQMPGSLCSFPRVITAGSSSQEEDLSLNAHMNASTSDALLAQC---------RFNL 1104

  Fly   925 KPEELMNMTVSFTVNL--------KDADDIWEYFVIQTDLKVHKIGDPTLSSFTIEKKIESNVIC 981
            .|:..:::||:..:||        |..|     .|:...:::    .|:...|..|::...::|.
Zfish  1105 SPQADVSITVTGWLNLHTLLAVKFKRLD-----LVMTATVEL----SPSNPMFLHEERPMRHIIL 1160

  Fly   982 -----KHAEIAIWKIIVSVIVGILVFSAATYALYKRGFFKRAIKDDLKQLIRDSFEDGIIRTEME 1041
                 :...|.:|.||.|.:.|:.:.:....||:|.|||.|..:.               |.|.|
Zfish  1161 EIRKEEDYRIPVWVIIGSTLGGLQLLALLVLALWKLGFFHRQKRK---------------RDEQE 1210

  Fly  1042 ENAQSQGD 1049
            .|.::..|
Zfish  1211 ANEKTAED 1218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 23/75 (31%)
Int_alpha 384..434 CDD:214549 16/51 (31%)
Int_alpha 447..>492 CDD:214549 12/44 (27%)
Integrin_alpha2 484..808 CDD:285619 73/385 (19%)
itga11bXP_695559.7 Int_alpha 73..123 CDD:214549
vWA_integrins_alpha_subunit 199..376 CDD:238746 20/117 (17%)
Int_alpha 574..628 CDD:214549 17/53 (32%)
Int_alpha 639..>665 CDD:214549 7/25 (28%)
Integrin_alpha2 671..1071 CDD:312071 87/474 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574928
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.840

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