DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS4 and itga3a

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:XP_017210291.1 Gene:itga3a / 407685 ZFINID:ZDB-GENE-090805-3 Length:1073 Species:Danio rerio


Alignment Length:1192 Identity:273/1192 - (22%)
Similarity:463/1192 - (38%) Gaps:268/1192 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LLVIVLLALQSEINAYNISPYPNSVLNFPEL-EGNRRSSYFGFSLVIREK-------SIMVAAP- 59
            |.::.:|:......|:|:.      ::|..: ||....|.||.|:.:.|:       .::|.|| 
Zfish    11 LTLVFVLSAARLCQAFNLD------VSFAVVKEGKTAGSLFGLSVALHEQVVNEKRHMLLVGAPK 69

  Fly    60 -RANSSLEAQRNISEPGVIFRCYFES-GNNCSPYNI-----DTKGNYKGMPNDGLLTAKNKDFRW 117
             :|.|.|.|    :|.|.::.|...: ..:|:..|:     :.|.:.|....||:         |
Zfish    70 EKAESGLSA----NETGDVYACPISADSKDCARLNLISSNPEDKPDLKNYVIDGM---------W 121

  Fly   118 LGGAMDGGTRDSDKFLVCAPRFYSINNENDYNNGMCYWL-SDTPKNIDSTEVMEKW--------P 173
            ||.::...::...:.:.|..|:......|....|.||.. :|...|:...:    |        |
Zfish   122 LGVSIVSQSQPGGRVVACGHRYIRNFTSNFRMIGRCYVRGNDLQLNLSDYQ----WQSYDEICDP 182

  Fly   174 LRIEKKQVLKLADTNLIPYYSMGELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQEVPS----- 233
            ...:..:.:.|             ||:||.|:  .|::..||||...|:|::..|...|:     
Zfish   183 REAQNSEGMCL-------------LGMSAAVT--FSEIFFGAPGCFNWQGNIFSKWHNPADEFHL 232

  Fly   234 IKTSSGRQRRGMNTNRKCNECNPEPKNFGQEEFSYFGYAVSSGYFDSSNL----STVLYVATAPR 294
            :|:.....|:|               |.      |.||   |...|...|    .||  |..|||
Zfish   233 LKSKLPDSRKG---------------NI------YIGY---STIVDQDVLVKGKDTV--VTGAPR 271

  Fly   295 GNNQFGEAYIFDIYED----SIYKYHEFRGNHFGEYFGYSVLAEDLNGDGKTDVIISAPLYALRN 355
            ...: |...:.::.:.    .:.......|...|.|||.||...|||.||..|:|:.||.|..|.
Zfish   272 DEAK-GSVMMAEVLKSGGSGEVKIKVTVTGEQVGSYFGNSVAVVDLNNDGWKDLIVGAPFYFDRK 335

  Fly   356 SYDDGAIYVFINK-GSF-TFEERIIRSPAGSGGRFGTTLSRIGDINKDGYNDVAVGAPFAGNGSV 418
            ....||:||::|: ||| ...:.::..|..||  ||.::..|||:|:||:.|.|||||:...|.|
Zfish   336 MDKGGAVYVYMNQNGSFRNKSDVVLTGPKDSG--FGMSVVAIGDVNQDGFQDFAVGAPYHSTGRV 398

  Fly   419 FIYLGSENGLRDPPSQCLDAPSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYR 483
            .|:.||:.|:...|||.:|.......  |...||:.:|||.|:|.||:.|.|:|:.: :.|.|.|
Zfish   399 SIWTGSKTGISQEPSQVIDGKDIPGG--GFQTFGYSISRGLDVDRNGYPDIAVGSLD-DRVVLLR 460

  Fly   484 AYPVV--KIHAIIKPKLQNVNPEEERVNITVC--YRLSSKSDSKAKALMEQELVIRIDIDTKSKI 544
            :.||:  |....:.|.:.|:......:...||  |..|:.:.|..||:..| ..:..|..:....
Zfish   461 SRPVIHLKNTFTVTPMVINLEDCVACIEAKVCFSYTYSTGTASSQKAVTLQ-YTVEADQQSSRSP 524

  Fly   545 KLAVFDEEHG---SQMSFKAKAFHEEICSEFQIEMDKRA---KFTPIALEMQYELSKKIPNSGDF 603
            :::..|...|   .:||.....    .|...::|:..:.   |.:.|..::...:....|:.|..
Zfish   525 RVSFLDNNKGKYTGKMSVNPSG----DCHSLKLELASKTIQDKVSAIIFQLSVSVVDPPPSGGKM 585

  Fly   604 CEDCA---VVDPAEPKFVTEYITFNTGCATD-VCVADLKISC-----------INASSTLVLGTT 653
            .||.:   |:...:.......|.....|..| .|.::|:::.           :.....:...||
Zfish   586 LEDLSAFPVISQRDALTGRAEIHIQKACGLDNKCESNLQMTAAFTDEKNTPFLMQEDHQIFNYTT 650

  Fly   654 AV--LRLTYNITN------NGEFAYHPKFSVTNSAGLSLA----QVP----GNCKVNEAVMVCDL 702
            .:  |:|..|::|      ..|.||:...::|..:.||.:    ::|    |:.....:.::|.|
Zfish   651 DIKKLKLLVNVSNVPSEGRKAEDAYNAILNITIPSSLSFSSLNPKLPSTLNGDPSSGGSYLLCTL 715

  Fly   703 ----NHGQRMAKGDT-DSLTISFDVRQLRGRSLEIQAEVLSARDESNPENNKLT----------- 751
                ...||:....| ::..||.|::::   ..|:|...||.:::..|.:..|.           
Zfish   716 GDPFKSNQRVEIEITFETSGISIDMQEI---ETELQLSTLSDQNDLRPLSRVLLVEYILQPLFNL 777

  Fly   752 ----------NVL---SLREKADIYVSGVQTNDHVVLKESPYTAEVVNYYEIKSHGPSTLENLTV 803
                      ||:   :::..:|| .|.|:.|..|.:...|...  :.:.|:....||.:.|...
Zfish   778 IPYFRAEFSGNVVGESAMKSTSDI-GSPVEFNISVDISGKPLGN--LGFLEVVFQWPSAVANEKW 839

  Fly   804 SLYIPVAYKTPDS---------TNVKHIVTSSPKIQSKYAHKIMPINFIDQNNALANNFAIDHDQ 859
            .||:.....|..|         .|..::..|..|.:.:...:::                   .:
Zfish   840 LLYLSEIQMTGTSESFCVAKGIVNPLNLTVSERKSRRRKRDEVL-------------------SE 885

  Fly   860 STLLFSATPQHENVGNLSGIVEQNPSISLLNEDLPVNNTLVLNC--QDTNVTLCVPVEIRLENGL 922
            |.|..|   |....|       ||....:||...........:|  .....:..:.|..|:.|..
Zfish   886 SKLAMS---QKTRQG-------QNKPREVLNCTKGTARCQTFSCPLSAMKTSAMLTVRARVWNST 940

  Fly   923 QLKPEELMNMTVSFTVNLKDADDIWEYFVIQTDLKVHKIGDPTLSSFTIEKKIESNVICK-HAEI 986
            .|:......::|..:|.|          .::||.|..|:.: .:..||:|  |:..|..: ..|.
Zfish   941 MLEDYRAKGVSVQGSVML----------TLKTDKKNIKMNN-NIREFTVE--IDPAVAEELPYEA 992

  Fly   987 AIWKIIVSVIVGILVFSAATYALYKRGFFKRAIKDDLKQLIRDSFE-----DGIIRTEMEENAQS 1046
            .:|.|||||:.|:::.......|:|.|||.|.          |.|.     .|:...:.|:...:
Zfish   993 PLWIIIVSVLSGVVMLGVIVILLWKSGFFTRI----------DYFRAMPKYKGVRICKKEQYQVN 1047

  Fly  1047 QGDADLDEKLDAYADTTGKCTH 1068
            ||...|        |||....|
Zfish  1048 QGFLIL--------DTTNNRKH 1061

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 31/74 (42%)
Int_alpha 384..434 CDD:214549 23/49 (47%)
Int_alpha 447..>492 CDD:214549 19/46 (41%)
Integrin_alpha2 484..808 CDD:285619 75/393 (19%)
itga3aXP_017210291.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574940
Domainoid 1 1.000 61 1.000 Domainoid score I10420
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.740

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