DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ItgaPS4 and ITGA1

DIOPT Version :10

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:NP_852478.1 Gene:ITGA1 / 3672 HGNCID:6134 Length:1179 Species:Homo sapiens


Alignment Length:1053 Identity:235/1053 - (22%)
Similarity:411/1053 - (39%) Gaps:239/1053 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 KGNYKGMPNDGLLTAKNKDFRWLGGA-----------MDGGTRDSDKFLV----CAP---RFYSI 142
            :|..:.|...|:.||:.:.|....||           .||.:.|:.:...    |..   :.:||
Human   243 RGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSI 307

  Fly   143 NNENDYNNGMCYWLSDTPKNID-----STEVMEKWPLRIEKKQVL---------------KLADT 187
            .....||.|..    .|.|.::     ::|..||....:..:..|               ..||.
Human   308 AILGSYNRGNL----STEKFVEEIKSIASEPTEKHFFNVSDELALVTIVKTLGERIFALEATADQ 368

  Fly   188 NLIPY-YSMGELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQE----VPSIKTSSGRQRRGMNT 247
            :...: ..|.:.|.|||.|.|  .:::||.|...|.|:|.:::.    :|            .||
Human   369 SAASFEMEMSQTGFSAHYSQD--WVMLGAVGAYDWNGTVVMQKASQIIIP------------RNT 419

  Fly   248 NRKCNECNPEPKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQFGEAYIFDIYEDSI 312
            .     .|.|.....:...||.||.|:|....|.:   |||:|..||.|:. |:..|:.:.:.:|
Human   420 T-----FNVESTKKNEPLASYLGYTVNSATASSGD---VLYIAGQPRYNHT-GQVIIYRMEDGNI 475

  Fly   313 YKYHEFRGNHFGEYFGYSVLAEDLNGDGKTDV-IISAPLYALRNSYDDGAIYVF-INKGSFTFE- 374
            .......|...|.|||..:...|::.|..||: ::.||:|......:.|.:||: :|:..|.:: 
Human   476 KILQTLSGEQIGSYFGSILTTTDIDKDSNTDILLVGAPMYMGTEKEEQGKVYVYALNQTRFEYQM 540

  Fly   375 --ERIIRSPAGS---------------GGRFGTTLSRIGDINKDGYNDVAVGAPFAGN--GSVFI 420
              |.|.::...|               |.||||.::.:.|:|.||:||:.:|||...:  |:|:|
Human   541 SLEPIKQTCCSSRQHNSCTTENKNEPCGARFGTAIAAVKDLNLDGFNDIVIGAPLEDDHGGAVYI 605

  Fly   421 YLGSENGLRDPPSQCLDAPSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAY 485
            |.||...:|...:|.:  ||....|...: ||..:....|::|:|..|..||.....|::..|..
Human   606 YHGSGKTIRKEYAQRI--PSGGDGKTLKF-FGQSIHGEMDLNGDGLTDVTIGGLGGAALFWSRDV 667

  Fly   486 PVVKIHAIIKPKLQNV--------NPEEERVNITVCY--RLSSKSDSKAKALMEQELVIRIDIDT 540
            .|||:....:|...|:        ..|...:|.|||:  :|.||.|:    :.|.:|..|:.:|:
Human   668 AVVKVTMNFEPNKVNIQKKNCHMEGKETVCINATVCFDVKLKSKEDT----IYEADLQYRVTLDS 728

  Fly   541 KSKIKLAVFD--EEHGSQMSFKAKAFHEEICSEFQIEM-DKRAKFTPIALEMQYELSKKIPNSGD 602
            ..:|..:.|.  :|...|.:...:   :..|::....| ||......:.:.:.:.|:.  |.:| 
Human   729 LRQISRSFFSGTQERKVQRNITVR---KSECTKHSFYMLDKHDFQDSVRITLDFNLTD--PENG- 787

  Fly   603 FCEDCAVVDPAEPKFVTEYITFNTGCAT-DVCVADLKISCINASSTLVL--GTTAVLRLTYNITN 664
                 .|:|.:.|..|.|||.|...|.. :.|::||.:........|::  .......::..:.|
Human   788 -----PVLDDSLPNSVHEYIPFAKDCGNKEKCISDLSLHVATTEKDLLIVRSQNDKFNVSLTVKN 847

  Fly   665 NGEFAYHPKFSVTNSAGLSLAQVPGNCKVNEAVM--VCDLNHG-------QRMAKGD--TDSLTI 718
            ..:.||:.:..|..|..|..:.:       ||:.  .|:.||.       ..:.:|:  |..:..
Human   848 TKDSAYNTRTIVHYSPNLVFSGI-------EAIQKDSCESNHNITCKVGYPFLRRGEMVTFKILF 905

  Fly   719 SFDVRQLRGRSLEIQAEVLSA-RDESNPENNKLTNVLSLREKADIYVSGVQ-----TNDHVVLKE 777
            .|:...|    :|.....||| .|...|......||:::..... |..|:|     :..|:.:..
Human   906 QFNTSYL----MENVTIYLSATSDSEEPPETLSDNVVNISIPVK-YEVGLQFYSSASEYHISIAA 965

  Fly   778 SPYTAEVVN-----------YYEIKSHGPSTLENLTVSLYI--------PVAYKT----PDSTNV 819
            :....||:|           :|.|:..|...:..|.:|:..        ||.|.|    .::.|.
Human   966 NETVPEVINSTEDIGNEINIFYLIRKSGSFPMPELKLSISFPNMTSNGYPVLYPTGLSSSENANC 1030

  Fly   820 KHIVTSSPKIQSKYAHKIMPINFIDQNNALANNFAIDH-DQSTLLFSATPQHENVG-NLSGIVEQ 882
            :..:...|               ...|:......:.|| .:.|:|...|.:...:. ||:     
Human  1031 RPHIFEDP---------------FSINSGKKMTTSTDHLKRGTILDCNTCKFATITCNLT----- 1075

  Fly   883 NPSISLLNEDLPVNNTLVLNCQDTNVTLCVPVEIRLENGLQLKPEELMNMTVSFTVNLKDADDIW 947
            :..||.:|..|.:.....:....:::.|.:..|:|.||.         ::.:| :.|.|.     
Human  1076 SSDISQVNVSLILWKPTFIKSYFSSLNLTIRGELRSENA---------SLVLS-SSNQKR----- 1125

  Fly   948 EYFVIQTDLKVHKIGDPTLSSFTIEKKIESNVICKHAEIAIWKIIVSVIVGILVFSAATYALYKR 1012
                 :..:::.|.|.|                   ..:.:|.|::|...|:|:......||:|.
Human  1126 -----ELAIQISKDGLP-------------------GRVPLWVILLSAFAGLLLLMLLILALWKI 1166

  Fly  1013 GFFKRAIKDDLKQ 1025
            |||||.:|..:::
Human  1167 GFFKRPLKKKMEK 1179

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 FG-GAP_3 335..408 CDD:433275 26/92 (28%)
Int_alpha 384..434 CDD:214549 22/66 (33%)
Int_alpha 447..>492 CDD:214549 13/44 (30%)
Integrin_alpha2 486..808 CDD:462478 77/373 (21%)
ITGA1NP_852478.1 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 30..91
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 101..160
vWA_integrins_alpha_subunit 171..351 CDD:238746 23/111 (21%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 365..417 16/65 (25%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 422..475 18/56 (32%)
Int_alpha 434..474 CDD:214549 16/43 (37%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 476..538 17/61 (28%)
Int_alpha 486..>529 CDD:214549 13/42 (31%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 557..615 20/57 (35%)
Int_alpha 568..621 CDD:214549 22/52 (42%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 619..679 17/62 (27%)
Integrin_alpha2 665..1033 CDD:462478 83/394 (21%)
GFFKR motif 1167..1171 3/3 (100%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.