DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS4 and Itga4

DIOPT Version :10

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:NP_001101207.1 Gene:Itga4 / 311144 RGDID:1593249 Length:1036 Species:Rattus norvegicus


Alignment Length:64 Identity:22/64 - (34%)
Similarity:30/64 - (46%) Gaps:11/64 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KVSNTS--ENMAERRQNEP----PSTG--NRNLPLKTPKG---TRDYGPGAMALRQRLLDQVVR 90
            :|:|||  .|:...:|..|    ||.|  ..:|||.|...   .:..||.....||.||:|.|:
  Rat   394 QVTNTSVPNNVVSLQQVNPSPNMPSAGENGNSLPLLTSMDLEILQPNGPTGNQPRQDLLNQQVQ 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 FG-GAP_3 335..408 CDD:433275
Int_alpha 384..434 CDD:214549
Int_alpha 447..>492 CDD:214549
Integrin_alpha2 486..808 CDD:462478
Itga4NP_001101207.1 Int_alpha 52..109 CDD:214549
Int_alpha 307..355 CDD:214549
Int_alpha 370..422 CDD:214549 10/27 (37%)
Int_alpha 433..483 CDD:214549 8/25 (32%)
Integrin_alpha2 468..906 CDD:462478
Blue background indicates that the domain is not in the aligned region.

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