DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ItgaPS4 and Itgal

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:XP_006230331.1 Gene:Itgal / 308995 RGDID:631424 Length:1161 Species:Rattus norvegicus


Alignment Length:1314 Identity:267/1314 - (20%)
Similarity:446/1314 - (33%) Gaps:455/1314 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IVLLALQSEINA--YNI-SPYPNSVLNFPELEGNRRSSYFGFSLVIREKSIMVAAPRANSSLEAQ 68
            ::||.||..:||  ||: :.:..|.|       .:...:||:.::.....::|.||...:|    
  Rat    10 LLLLGLQLFVNAWSYNLDTRHAQSFL-------TQAGRHFGYQVLQFGDGVVVGAPGEGNS---- 63

  Fly    69 RNISEPGVIFRCYFESGNNCSPYNIDTKGNYKGMPNDGLLTAKNKDFRWLGGAMDGGTRDSDK-- 131
                 .|.::.|:..|| :|.|.::                ..|...::||..|   ..|:.|  
  Rat    64 -----TGSLYHCHPSSG-SCQPVHL----------------GSNHTSKYLGMTM---VTDAAKGS 103

  Fly   132 FLVCAPRFYSINNENDYNNGMCYWLSD-------------------------------------- 158
            .|.|.|......::|.|.:|:||..|.                                      
  Rat   104 LLACDPGLSRTCDQNPYLSGLCYLFSQSLGKPILQNRPAYQECMKGNVDLVFLFDGSQSLDKKDF 168

  Fly   159 -----------------------------------------------------TPK--------- 161
                                                                 ||.         
  Rat   169 EKIVDFMKDVMRKLSNTSYQFAAVQFSTECKTEFTFLDYIKLNKNPDVLLGNVTPMFLLTNTFRA 233

  Fly   162 -----------------------------------NIDSTEVMEKWPLRIEK------------- 178
                                               |||:.:.:.::.:.|.|             
  Rat   234 INYVVTHVFKEESGARPDATKVLVIITDGEASDNGNIDAAQDITRYIIGIGKHFSTTQKQEKLHI 298

  Fly   179 ------KQVLKLADT------------------------NLIPY-YSMGELGLSAHVSDDNSKLL 212
                  ::.:|:.||                        :|..: ..:...|:||.:|..::  :
  Rat   299 FASKPVEEFVKILDTFEKLKDLFTDLQRKIYAIEGTSKQDLASFNMELSSSGISADLSKGHA--V 361

  Fly   213 MGAPGIDQWKGS-VHLKQEVPSIKTSSGRQRRGMNTNRKCNECNPEPKNFGQEEFSYFGYAVSSG 276
            :||.|...|.|. :.|.:::.. .|..|:                ||.. ..|...|.||.|:  
  Rat   362 VGAVGAKDWAGGFLDLHEDLEG-ATFVGQ----------------EPLT-SDERGGYLGYTVA-- 406

  Fly   277 YFDSSNLSTVLYVATAPRGNNQFGEAYIFDIYEDSIY--KYHEFRGNHFGEYFGYSVLAEDLNGD 339
             :.:|..|..|..|.||| ....|:..:|...|...:  :..:..|...|.|||..:.:.||:.|
  Rat   407 -WLTSRSSRPLLAAGAPR-YQHVGQVLLFQAPEAGGHWNQTQKIEGTQIGSYFGGELCSVDLHQD 469

  Fly   340 GKTD-VIISAPLYALRNSYDD---GAIYVFINKGS-FTFEERIIRSPAGSGGRFGTTLSRIGDIN 399
            |:|| ::|.|||:     |.:   |.:.|:..:.| |.....:...|....||||..:|.:.|||
  Rat   470 GETDLLLIGAPLF-----YGEQRGGRVSVYQRRRSLFEMVSELQGDPGYPLGRFGAAISALTDIN 529

  Fly   400 KDGYNDVAVGAPFAGNGSVFIYLGSENGLRDPPSQCLDAPSQQPSKYGSYMFGHGLSRGSDIDGN 464
            .||..|||||||....|:|:|:.|...|.....||.:......|   |...||..:....|:.|:
  Rat   530 GDGLTDVAVGAPLEEQGAVYIFNGKPGGFSSQSSQRIPGTQVSP---GVRWFGRSIHGVKDLGGD 591

  Fly   465 GFNDFAIGAPNAEAVYLYRAYPVVKIHAIIKPKLQNVNPEE-----------------ERVNITV 512
            ...|..:||..  .|.:..:.|||.|...:     :.:|:|                 |.|.:.|
  Rat   592 RLADVVVGAEG--QVIVLSSRPVVDIVTEL-----SFSPDEIPVHEVECSYSASQEQKEGVKLKV 649

  Fly   513 CYRLSS-KSDSKAKALMEQELVIRID-IDTKSKIKLAVFDEEHG---------SQMSFKAKAFHE 566
            |:::.. .|..:.:.|......:::| ..|:|:........|.|         |.|.|.   ||.
  Rat   650 CFQIRPLTSQFQGRLLANLSYTLQLDGHRTRSRGLFPGGSRELGGNTSVTPDKSCMDFH---FHF 711

  Fly   567 EICSEFQIEMDKRAKFTPIALEMQYELSKK--IPNSGDFCEDCAVVDPAEPKFVTEYITFNTGCA 629
            .||.:..|        :||.:.:.:.|.::  .|.......|...:.......||:.|.|...|.
  Rat   712 PICIQDLI--------SPINVSLNFSLLEEEGSPRDQKGGRDMQPILRPSIHAVTKEIPFEKNCG 768

  Fly   630 TD-VCVADLKISCINASSTLVLGTTAVLRLTYNITNNGEFAYHPKFSVTNSAGLSL--------- 684
            .| .|.|||.:|....|..|.|.::|.|.:.:.:.|.||.||..:..:....|||.         
  Rat   769 EDKKCEADLALSPPARSGVLRLMSSASLAVEWTLRNLGEDAYWVRLDLDFPRGLSFRKVEMLQPH 833

  Fly   685 AQVPGNCK--VNEAVMV-----CDLNH-----GQRMAKGDTDSLTISFD--VRQLRGRSLEIQAE 735
            :|:|.:|:  ..|:.::     |:::.     |::|      :|.:.|:  :....|..:|:...
  Rat   834 SQIPVSCEELTEESSLLTKTLKCNVSSPIFKAGKQM------TLQVMFNTLLNSSWGDFVELNGT 892

  Fly   736 VLSARDESN--PENNKLTNVLSLREKADIYVSGVQTNDHVVLKESPYTAEVVNYYEIKSHGPSTL 798
            |....:.|:  .:|:..|.:..|      |...:.|.|.                          
  Rat   893 VHCENENSSLGKDNSATTRIPVL------YPVNILTEDQ-------------------------- 925

  Fly   799 ENLTVSLYIPVAYKTPDSTNVKHIVTSSPKIQSKYAHKIMPINFIDQNNALANNFAIDHDQSTL- 862
            ||.|  |||....|.|.:..|:||          |..:|.|             .|.||:...| 
  Rat   926 ENST--LYISFTPKGPKTQQVQHI----------YKVRIQP-------------SAYDHNMPALE 965

  Fly   863 LFSATPQHENVGNL--SGIVEQNPSISLLNEDL---------PVNNTLVLNC-----QDTNVTLC 911
            .....||..:.|.:  :..|..:|.::...|||         |....:...|     |:|.:.:.
  Rat   966 ALVEVPQPHSEGPIAHTWTVHTDPLVTCHREDLKKPTREAEQPCLPGVQFRCPIVFRQETFIRVA 1030

  Fly   912 VPVEIRLENGLQLKPEELMNMTVSFTVNLKDADDIWEYFVIQTDLKVHKIGDPTLSSFTIEKKIE 976
            ..||:    ..::|....:::..|.:|:...:    ::|        |..|         .|..:
  Rat  1031 GTVEL----SEKIKASSTLSLCSSLSVSFNSS----KHF--------HLYG---------SKASK 1070

  Fly   977 SNVICK----HAEIAIWKIIVSVIVGILVFSAATYALYKRGFFKRAIKDDLKQLIRDSFEDGIIR 1037
            :.|:.|    :.:..:...::|.|.|:|:.|....||||.|||||.:|:.::       .||.: 
  Rat  1071 AQVLMKVDMIYEKEMLHLYVLSGIGGLLLLSLIFLALYKVGFFKRKLKEKME-------ADGGV- 1127

  Fly  1038 TEMEENAQSQGDAD 1051
                .|.....|||
  Rat  1128 ----PNGSPGEDAD 1137

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 28/77 (36%)
Int_alpha 384..434 CDD:214549 22/49 (45%)
Int_alpha 447..>492 CDD:214549 13/44 (30%)
Integrin_alpha2 484..808 CDD:285619 78/379 (21%)
ItgalXP_006230331.1 Int_alpha 38..81 CDD:214549 12/52 (23%)
vWFA 151..320 CDD:294047 10/168 (6%)
Int_alpha 398..448 CDD:214549 14/53 (26%)
Int_alpha 453..499 CDD:214549 17/50 (34%)
Int_alpha 514..566 CDD:214549 24/51 (47%)
Int_alpha 577..621 CDD:214549 12/50 (24%)
Integrin_alpha2 609..977 CDD:285619 93/446 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335719
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.840

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