DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS4 and Itgam

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:XP_006230276.1 Gene:Itgam / 25021 RGDID:2926 Length:1152 Species:Rattus norvegicus


Alignment Length:1279 Identity:255/1279 - (19%)
Similarity:460/1279 - (35%) Gaps:399/1279 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LVIVLLALQSEINAYNISPYPNSVLNFPELEGNRRSSYFGFSLV-IREKSIMVAAPRANSSLEAQ 68
            |::.:|.|....|....:|     :.|.|   |.|.  ||.|:: :.|..::||||      :..
  Rat     6 LLVTVLTLCHGFNLDTENP-----MTFQE---NARG--FGQSVIQLGETRVVVAAP------QEV 54

  Fly    69 RNISEPGVIFRCYFESGNNCSPYNIDTKGNYKGMPNDGLLTAKNKDFRWLGGAMDGGTRDSDKFL 133
            :.:::.|.:::|.: |.|.|.|..:........|.              ||.:: ..|....:.|
  Rat    55 KAVNQTGALYQCDY-STNRCDPIPLQVPPEAVNMS--------------LGLSL-AATTVPPQLL 103

  Fly   134 VCAPRFYSINNENDYNNGMCY----------------------------WLSDTPKNIDSTE--- 167
            .|.|..:....||.|.||:||                            :|.|...:|:|.:   
  Rat   104 ACGPTVHQNCKENTYVNGLCYLFGSNLLRKPQQFPEALRGCPQQESDIAFLIDGSGSINSIDFQK 168

  Fly   168 -------VMEKW------------------------------------PLR-----------IEK 178
                   ||:::                                    |:|           |.|
  Rat   169 MKEFVSTVMDQFQKSKTLFSLMQYSDEFRTHFTFNDFKRNPDPKSHVRPIRQLNGRTKTASGIRK 233

  Fly   179 -----------------KQVLKLAD-------------------TNLIPY--------------- 192
                             |.::.:.|                   ..:|.|               
  Rat   234 VVRELFQKINGARDNAAKILVVITDGEKFGDPLNYEDVIPEAEEAGIIRYVIGVGNAFHKPQSRR 298

  Fly   193 -------------------------------------------------YSMGELGLSAHVSDDN 208
                                                             :.|.:.|.||.::.:.
  Rat   299 ELDTIASKPAGDHVFQVDNFEALNTIRNQLQEKIFAIEGTQTGSTSSFEHEMSQEGFSAAITSNG 363

  Fly   209 SKLLMGAPGIDQWKGSVHLKQEVPSIKTSSGRQRRGMNTNRKCNECNPEPKNFGQEEFSYFGYAV 273
            .  |:|:.|...|.|...|   .||...::     .:||.|..::.|.          :|.||| 
  Rat   364 P--LLGSVGSFDWAGGAFL---YPSKDKAT-----FINTTRIDSDMND----------AYLGYA- 407

  Fly   274 SSGYFDSSNLSTVLYVATAPRGNNQFGEAYIFDIYEDSIYKYHEFRGNHFGEYFGYSVLAEDLNG 338
             |.....:.:.::  |..||| ....|...:|.....:...:.:.:|:..|.|||.|:.:.|::.
  Rat   408 -SAVISRNRVQSL--VLGAPR-YQHIGLVVMFKQNFGAWEPHTDIKGSQIGSYFGASLCSVDMDA 468

  Fly   339 DGKTD-VIISAPLYALRNSYD---DGAIYVF-INKGSFTFE--ERIIRSPAG-SGGRFGTTLSRI 395
            ||.|: ::|.||     :.|:   .|.:.|. :.:|.....  |.|:....| ..||||..|:.:
  Rat   469 DGNTNLILIGAP-----HHYEKTRGGQVSVCPLPRGQRARWQCEAILHGDQGHPWGRFGAALTVL 528

  Fly   396 GDINKDGYNDVAVGAP--FAGNGSVFIYLG-SENGLRDPPSQCLDAPSQQPSKYGSYMFGHGLSR 457
            ||:|.|...|||:|||  ....|:|:|:.| |...:..|.||.:......|   |...||..||.
  Rat   529 GDVNGDKLTDVAIGAPGEQENQGAVYIFHGASVASISTPHSQRIAGARFSP---GLQYFGQSLSG 590

  Fly   458 GSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKIHAIIKPKLQNV-------------NPEEERVN 509
            |.|:..:|..|.|:||..  .:.|.||.||:::.|.::...:|:             |.:...|.
  Rat   591 GKDLTMDGLMDLAVGAQG--RLLLIRAQPVLRLEATMEFSPKNLARSVFACQEEVVKNKDAGEVR 653

  Fly   510 ITVCYRLSSKSDSKAKALMEQELVIRIDIDTKSKIKLAVFDE-EHGSQMSFKAKAFHEEICSEFQ 573
            :.:..|.::| |...:..::..:...:.:|....:..|.||| ::|.....:.....:: |...:
  Rat   654 VCLHVRKNTK-DRLREGDIQSTVTYDLALDPGRSVVRAFFDETKNGILRRIRVFGLTQK-CETLK 716

  Fly   574 IEMDKRA--KFTPIALEMQYEL-SKKIPNSGDFCEDCAVVDPAEPKFVTEYITFNTGCATD-VCV 634
            :.:....  ..:||.|.:.|.| .:.:.:|.|.   ..|:.....:..|....|...|..| :|.
  Rat   717 LILPDCVDNSVSPIILRLNYTLVGEPLRSSRDL---RPVLAMEAQRIFTAMFPFEKNCGNDTICQ 778

  Fly   635 ADLKISCINAS-STLVLGTTAVLRLTYNITNNGEFAYHPKFSVTNSAGLSLAQV----------- 687
            .||.|:..:.. :|||:|.:....::..:.|:||.:|..|.:....:|||..:|           
  Rat   779 DDLSITVSSIRVNTLVVGDSRDFDVSVTLRNDGEDSYGTKVTCYYPSGLSYRKVSASQNQFSKKP 843

  Fly   688 ------PGNCKVNEAVM---VCDLNHGQRMAKGD-TDSLTISFDVRQLRGRSLEIQAEVLSARDE 742
                  |.:.: .:.|:   :.|:||....|..: |.::|...|.....|..|.::..|.|..:.
  Rat   844 WRVIAEPSSSE-GQGVLKSTIWDINHPIFPANSEVTFNVTFDVDSDASLGNKLLLKVVVTSENNV 907

  Fly   743 SNPENNKLTNVLSLREKADIYV---SGVQTNDHVVLKESPYTAEVVNY-YEIKSHGPSTLENLTV 803
            |  ..:|..:.|.|..|..||:   ||..:..::....|..|::|:.: |:..:.|..:.. ::|
  Rat   908 S--RTDKTESQLELPVKYAIYMVVTSGESSIKYLNFTASEMTSKVIQHQYQFNNLGQRSFP-VSV 969

  Fly   804 SLYIPVAYKTPDSTNVKHIVTSSPKIQSKYAHKIMPINFIDQNNALANNFAIDHDQSTLLFSATP 868
            ..:|||...       |..:...|::                                 .||   
  Rat   970 VFWIPVQIN-------KVTIWDPPQV---------------------------------TFS--- 991

  Fly   869 QHENVGNLSGIVEQNPSISLLNEDLPVNNTLVLNCQDTNVTLCVPVEIRLENGLQLKPEELMNMT 933
              :|:.::....:::||.|...::|  ..|.||||   :|.:|..::..:.:   ...:|:.|:|
  Rat   992 --QNLSSVCRTEQKSPSHSKFQDEL--ERTPVLNC---SVAVCKRIQCDIPS---FNSKEIFNVT 1046

  Fly   934 VSFTVNLKDADDIWEYFVIQTD------LKVHKI-----------GDPTLSSFTIEKKIESNVIC 981
            :...:       ::::: |:|.      :...:|           |..|......|.|:|...: 
  Rat  1047 LQGNL-------LFDWY-IETSHDHLLLVSTAEILFNDSAFALLPGQETFVKAQTETKVEPYKV- 1102

  Fly   982 KHAEIAIWKIIVSVIVGILVFSAATYALYKRGFFKRAIKDDLKQ 1025
             |..:.:  |:.|.:.|:::.:..|..|||.|||||..||.:.:
  Rat  1103 -HNPVPL--IVGSSVGGLVLLALITAGLYKLGFFKRQYKDMMNE 1143

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 25/80 (31%)
Int_alpha 384..434 CDD:214549 21/52 (40%)
Int_alpha 447..>492 CDD:214549 17/44 (39%)
Integrin_alpha2 484..808 CDD:285619 74/367 (20%)
ItgamXP_006230276.1 vWA_integrins_alpha_subunit 149..324 CDD:238746 14/174 (8%)
Int_alpha 453..510 CDD:214549 17/61 (28%)
Int_alpha 517..570 CDD:214549 21/52 (40%)
Int_alpha 582..>606 CDD:214549 9/23 (39%)
Integrin_alpha2 615..1032 CDD:285619 93/475 (20%)
Integrin_alpha 1129..1141 CDD:278771 8/11 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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