DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ItgaPS4 and Itgae

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:NP_032425.2 Gene:Itgae / 16407 MGIID:1298377 Length:1167 Species:Mus musculus


Alignment Length:949 Identity:208/949 - (21%)
Similarity:363/949 - (38%) Gaps:260/949 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 YSMGELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQEVPSIKTSSGRQRRGMNTNRKCNECNPE 257
            |.:.:.|.||.:. |..::|:|..|...|.|...|      ..|.:|   ||...|:...|    
Mouse   392 YQLAQTGFSAQIL-DKGQVLLGTVGAFNWSGGALL------YSTQNG---RGCFLNQTAKE---- 442

  Fly   258 PKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQFGEAYIFDI-----YEDSIYKYHE 317
              :....::||.||:::..:    ....|.|||.|||...:   ..:|::     .||:..:  .
Mouse   443 --DSRTVQYSYLGYSLAVLH----KAHGVSYVAGAPRHKLR---GAVFELRKEDREEDAFVR--R 496

  Fly   318 FRGNHFGEYFGYSVLAEDLNGDGKTD-VIISAPLYALRNSYDDGAIYVF---INKGSFTFEERII 378
            ..|...|.|||..:...|::.||.|| ::::||.|.:|.  ::|.:||:   ....||:....:.
Mouse   497 IEGEQMGSYFGSVLCPVDIDMDGTTDFLLVAAPFYHIRG--EEGRVYVYQVPEQDASFSLAHTLS 559

  Fly   379 RSPAGSGGRFGTTLSRIGDINKDGYNDVAVGAPFAG--------NGSVFIYLGSENGLRDPPSQC 435
            ..|..:..|||..::.:||||:|.:.|||:|||..|        .|||:||.|...||.|.|||.
Mouse   560 GHPGLTNSRFGFAMAAVGDINQDKFTDVAIGAPLEGFGAGDGASYGSVYIYNGHSGGLYDSPSQQ 624

  Fly   436 LDAPSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKIHAIIKPKLQN 500
            :.|.|...   |.:.||..:|.|.|.:|:|..|..:|:.::..|  .|:.|||.:...:     .
Mouse   625 IRASSVAS---GLHYFGMSVSGGLDFNGDGLADITVGSRDSAVV--LRSRPVVDLTVSM-----T 679

  Fly   501 VNPEE------ERVNITVCYRLSSKSDSKAKALMEQELVIRIDID-TKSKIKLAVFDEEHGSQM- 557
            ..|:.      .::::.:|:.:.|...:....|.|..|...:|:| ||.:.:|.. ::..|.|. 
Mouse   680 FTPDALPMVFIGKMDVKLCFEVDSSGVASEPGLREMFLNFTVDVDVTKQRQRLQC-EDSSGCQSC 743

  Fly   558 -------SFKAKAF----HEEICSEFQIEMDKRAKFTPIALEMQYELS-----KKIPNSGDFCED 606
                   ||..:.|    .||:|.|        ..|:.|.:::.||..     :..||       
Mouse   744 LRKWNGGSFLCEHFWLISTEELCEE--------DCFSNITIKVTYEFQTSGGRRDYPN------- 793

  Fly   607 CAVVDP-AEPKFVTEYITFNTGCATDV-CVADLKISCINASSTLVLGTTAVLRLTYNITNNGEFA 669
             ..:|. .||..:.: :.:...|...| |:|:::::...:...||:|.|..:.:..::||:||.:
Mouse   794 -PTLDHYKEPSAIFQ-LPYEKDCKNKVFCIAEIQLTTNISQQELVVGVTKEVTMNISLTNSGEDS 856

  Fly   670 YHPKFSVTNSAGLSLAQVPGNC---KVNEAVMVCDLNHGQRMAKGDTDSLTISFDVRQLRGRSLE 731
            |     :||.|    ...|.|.   |:.:.|                               |.:
Mouse   857 Y-----MTNMA----LNYPRNLQFKKIQKPV-------------------------------SPD 881

  Fly   732 IQAEVLSARDESNPENNKLTNVLSLREKADIYVSGVQTNDHVVLKESPYTAEVVNYYEIKSHGPS 796
            :|.      |:..|    :.:||.:..|.          .|.:||.|.....|....| :|..|:
Mouse   882 VQC------DDPKP----VASVLVMNCKI----------GHPILKRSSVNVSVTWQLE-ESVFPN 925

  Fly   797 TLENLTVSLYIPVAYKTPDSTNVKHIVTSSPKIQSKYAHKIMPINFIDQNNAL-ANNFAIDHDQS 860
            ...::||::         .::|.|.:...:..:|.::|.    |..:.:.:.: .|......|..
Mouse   926 RTADITVTI---------SNSNEKSLARETRSLQFRHAF----IAVLSRPSVMYMNTSQSPSDHK 977

  Fly   861 TLLFSATPQHENVGNLSGIVEQNPSISLLNEDLPVNNTLVLNCQDTNVTLCVPVE------IRLE 919
            ...|:...:     ||.|.|.|                         :.:|||::      :|::
Mouse   978 EFFFNVHGE-----NLFGAVFQ-------------------------LQICVPIKLQDFQIVRVK 1012

  Fly   920 NGLQLKP--------------------EELMNMTVSFTVNLKDADDIWEYFVIQTDLKVHKIGD- 963
            |..:.:.                    :|..::..:.|.|.::.....|..|..|...:..:.: 
Mouse  1013 NLTKTQDHTECTQSQEPACGSDPVQHVKEWHSVVCAITSNKENVTVAAEISVGHTKQLLRDVSEL 1077

  Fly   964 PTLSSFTIEKKIESN------------VICKHAEIAIWKIIV-SVIVGILVFSAATYALYKRGFF 1015
            |.|...:..|.:...            :..|..|.....:|: |.|.|:||.......|:|.|||
Mouse  1078 PILGEISFNKSLYEGLNAENHRTKITVIFLKEEETRSLPLIIGSSIGGLLVLVVIIAILFKCGFF 1142

  Fly  1016 KRAIKDDLKQLIRDSFEDGIIRTEMEENAQSQGDADLDE 1054
            ||..:.              :..|....||.:.|:.|.:
Mouse  1143 KRKYQQ--------------LNLESTRRAQLKADSLLQD 1167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 25/76 (33%)
Int_alpha 384..434 CDD:214549 25/57 (44%)
Int_alpha 447..>492 CDD:214549 15/44 (34%)
Integrin_alpha2 484..808 CDD:285619 69/352 (20%)
ItgaeNP_032425.2 FG-GAP 1 27..81
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 84..142
X-domain (extra domain) 149..192
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..191
vWA_integrins_alpha_subunit 196..371 CDD:238746
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 383..435 15/52 (29%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 438..491 13/65 (20%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 492..552 17/63 (27%)
Int_alpha 502..558 CDD:214549 18/57 (32%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 555..619 24/63 (38%)
Int_alpha 566..625 CDD:214549 27/58 (47%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 623..683 18/69 (26%)
Int_alpha 636..>659 CDD:214549 8/22 (36%)
Integrin_alpha2 668..>939 CDD:285619 69/363 (19%)
GFFKR motif 1140..1144 3/3 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167832033
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3637
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23220
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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