DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS4 and Itga6

DIOPT Version :10

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:NP_001264899.1 Gene:Itga6 / 16403 MGIID:96605 Length:1091 Species:Mus musculus


Alignment Length:1156 Identity:274/1156 - (23%)
Similarity:465/1156 - (40%) Gaps:250/1156 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 CLLVIVLLALQSEINAYNISPYPNSVLNFPELEGNRRS----SYFGFSLVIR-------EKSIMV 56
            |||.:....|.....|:|:....::|:        |:|    |.|||||.:.       ::.::|
Mouse     8 CLLYLSAGLLARLGTAFNLDTREDNVI--------RKSGDPGSLFGFSLAMHWQLQPEDKRLLLV 64

  Fly    57 AAPRANSSLEAQRNISEPGVIFRCYFESGNNCSPYNIDTKGNYKGMPNDGLLTAKNKDFRWLGGA 121
            .|||| .:|..|| .:..|.::.|...|...|:....|         ||....:::|:.:|:|..
Mouse    65 GAPRA-EALPLQR-ANRTGGLYSCDITSRGPCTRIEFD---------NDADPMSESKEDQWMGVT 118

  Fly   122 MD----GGTRDSDKFLVCAPRF---YSINNENDYNN--GMCYWLSDTPKNIDSTEVME--KWPLR 175
            :.    ||     |.:.||.|:   ..:|.:.:..:  |.||.||   :|:...:.|:  .|   
Mouse   119 VQSQGPGG-----KVVTCAHRYEKRQHVNTKQESRDIFGRCYVLS---QNLRIEDDMDGGDW--- 172

  Fly   176 IEKKQVLKLADTNLIPYYSMG--ELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQEVPSIKT-- 236
                   ...|..|..:...|  :.|::|..:.|...::.||||...|||.|.::|:..:...  
Mouse   173 -------SFCDGRLRGHEKFGSCQQGVAATFTKDFHYIVFGAPGTYNWKGIVRVEQKNNTFFDMN 230

  Fly   237 --SSGRQRRGMNTNRKCNECNPEPKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQF 299
              ..|....|..|:.. ....|.|.|      ||.|:::.||....|. ..:.:|:.|||.|:. 
Mouse   231 IFEDGPYEVGGETDHD-ESLVPVPAN------SYLGFSLDSGKGIVSK-DDITFVSGAPRANHS- 286

  Fly   300 GEAYIF--DIYEDSIYKYHEFRGNHFGEYFGYSVLAEDLNGDGKTDVIISAPLYALRNSYDDGAI 362
            |...:.  |:....:...:.|.|......|||.|...|||.||..|::|.||.|..|:....||:
Mouse   287 GAVVLLKRDMKSAHLLPEYIFDGEGLASSFGYDVAVVDLNADGWQDIVIGAPQYFDRDGEVGGAV 351

  Fly   363 YVFINKGSFTFEERIIRSPAGSGGRFGTTLSRIGDINKDGYNDVAVGAPFAGNGSVFIYLGSENG 427
            ||:||:.......:.||........||.::..|||||:|||.|:|||||:...|.||||.||..|
Mouse   352 YVYINQQGKWSNVKPIRLNGTKDSMFGISVKNIGDINQDGYPDIAVGAPYDDLGKVFIYHGSPTG 416

  Fly   428 LRDPPSQCLDAPSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKIHA 492
            :...|:|.|:..|.        .||:.::...|:|.|.:.|.|:|: .:::|.::|:.||:.|  
Mouse   417 IITKPTQVLEGTSP--------YFGYSIAGNMDLDRNSYPDLAVGS-LSDSVTIFRSRPVINI-- 470

  Fly   493 IIKPKLQNVNPEEERVNIT----------VCYRLSSKSDSKAK-----------ALMEQELVIRI 536
                 |:.:.....|:::.          :|.::.:..:..||           .::|.|...| 
Mouse   471 -----LKTITVTPNRIDLRQKSMCGSPSGICLKVKACFEYTAKPSGYNPPISILGILEAEKERR- 529

  Fly   537 DIDTKSKIKLAVFDEEHGSQMSF---------KAKAFHEEICSEFQIEMDKRAKFTPI----ALE 588
                ||.:...|.....||:..:         |.:|..||   ...::.:.|.|..||    ::|
Mouse   530 ----KSGLSSRVQFRNQGSEPKYTQELTLNRQKQRACMEE---TLWLQENIRDKLRPIPITASVE 587

  Fly   589 MQYELSKKIPNSGDFCEDCAVVDPAEPKFVTEYITF-NTGCATD-VCVADLKIS----------- 640
            :|...|::..||  ..|...:::..|.|.|...:.| ..||..| ||.::||:.           
Mouse   588 IQEPSSRRRVNS--LPEVLPILNSNEAKTVQTDVHFLKEGCGDDNVCNSNLKLEYKFGTREGNQD 650

  Fly   641 ------CINASSTLVLGTTAVLRLTYNITN----------NGEFAYHPKF------SVTNSAGLS 683
                  .......|||.....:.|...:||          :|:.|:..|.      ::|.||...
Mouse   651 KFSYLPIQKGIPELVLKDQKDIALEITVTNSPSDPRNPRKDGDDAHEAKLIATFPDTLTYSAYRE 715

  Fly   684 LAQVPG---NCKVNEAVMVCDLNHGQRMAKGDT-------DSLTISFDVRQLRGRSLEIQAEVLS 738
            |...|.   :|..|:.....|...|....:..:       .:..::||...|   .:.::.|..|
Mouse   716 LRAFPEKQLSCVANQNGSQADCELGNPFKRNSSVTFYLILSTTEVTFDTTDL---DINLKLETTS 777

  Fly   739 ARDESNPENNK-------LTNVLSLREKADIYVSGVQTNDHVVLKES------PYTAEVVNYYE- 789
            .:|...|...|       |.:|..:.:.:.:|..|....:..:..|.      .|...|:|..: 
Mouse   778 NQDNLAPITAKAKVVIELLLSVSGVAKPSQVYFGGTVVGEQAMKSEDEVGSLIEYEFRVINLGKP 842

  Fly   790 IKSHGPSTLENLTVSLYIPVAYKTPDSTNVKHIVTSSPKIQSKYAHKIM--PINFIDQNNALANN 852
            :|:.|.:||     ::..|     .:.:|.|.::... |::||...:|:  |.|.|       |.
Mouse   843 LKNLGTATL-----NIQWP-----KEISNGKWLLYLM-KVESKGLEQIVCEPHNEI-------NY 889

  Fly   853 FAIDHDQSTLLFSATPQHENVGNLSGIVEQNPSISLLNEDLPVNNTLVLNCQDTNVTLCVPVEIR 917
            ..:....::......|:.:        ::.:...||    .|......||| ..||. ||.:...
Mouse   890 LKLKESHNSRKKRELPEKQ--------IDDSRKFSL----FPERKYQTLNC-SVNVR-CVNIRCP 940

  Fly   918 LENGLQLKPEELMNMTVSFTVNLKDADDIWEYFVIQ-TDLKVHKIGDPTLSSFTIE--------- 972
            | .||..|...::..      .|.::..:.||..:. .|:.:....|.|.::..|:         
Mouse   941 L-RGLDSKASLVLRS------RLWNSTFLEEYSKLNYLDILLRASIDVTAAAQNIKLPHAGTQVR 998

  Fly   973 -KKIESNVICKHAEIAIWKIIVSVIVGILVFSAATYALYKRGFFKRAIKDD 1022
             ....|..:.:::.:|.|.|:::|:.|||:.:...:.|:|.|||||:..||
Mouse   999 VTVFPSKTVAQYSGVAWWIILLAVLAGILMLALLVFLLWKCGFFKRSRYDD 1049

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 FG-GAP_3 335..408 CDD:433275 30/72 (42%)
Int_alpha 384..434 CDD:214549 25/49 (51%)
Int_alpha 447..>492 CDD:214549 13/44 (30%)
Integrin_alpha2 486..808 CDD:462478 79/414 (19%)
Itga6NP_001264899.1 FG-GAP 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 30..95 20/74 (27%)
Int_alpha 40..100 CDD:214549 18/61 (30%)
FG-GAP 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 101..166 18/72 (25%)
FG-GAP 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 176..229 15/52 (29%)
FG-GAP 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 244..300 16/64 (25%)
Int_alpha 254..>292 CDD:214549 13/45 (29%)
FG-GAP 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 301..363 23/61 (38%)
FG-GAP 316..354 CDD:460357 18/37 (49%)
FG-GAP 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 364..419 26/54 (48%)
Int_alpha 374..425 CDD:214549 26/50 (52%)
FG-GAP 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00803 420..479 18/74 (24%)
Int_alpha 431..>454 CDD:214549 7/22 (32%)
Integrin_alpha2 465..939 CDD:462478 101/525 (19%)
GFFKR motif 1040..1044 3/3 (100%)

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