DRSC/TRiP Functional Genomics Resources

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Protein Alignment ItgaPS4 and Itga6

DIOPT Version :9

Sequence 1:NP_611025.2 Gene:ItgaPS4 / 36693 FlyBaseID:FBgn0034005 Length:1069 Species:Drosophila melanogaster
Sequence 2:XP_038960023.1 Gene:Itga6 / 114517 RGDID:621633 Length:1090 Species:Rattus norvegicus


Alignment Length:1162 Identity:272/1162 - (23%)
Similarity:466/1162 - (40%) Gaps:262/1162 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 CLLVIVLLALQSEINAYNISPYPNSVLNFPELEGNRRS----SYFGFSLVIR-------EKSIMV 56
            |||.:....|.....|:|:....::|:        |:|    |.|||||.:.       ::.::|
  Rat     8 CLLYLSAGLLARLSTAFNLDTREDNVI--------RKSGDPGSLFGFSLAMHWQLQPEDKRLLLV 64

  Fly    57 AAPRANSSLEAQRNISEPGVIFRCYFESGNNCSPYNIDTKGNYKGMPNDGLLTAKNKDFRWLGGA 121
            .|||| .:|..|: .:..|.::.|...|...|:....|         ||....:::|:.:|:|..
  Rat    65 GAPRA-EALPLQK-ANRTGGLYSCDITSRGPCTRIVFD---------NDADPMSESKEDQWMGVT 118

  Fly   122 MD----GGTRDSDKFLVCAPRF---YSINNENDYNN--GMCYWLSDTPKNIDSTEVME--KWPLR 175
            :.    ||     |.:.||.|:   ..:|.:.:..:  |.||.||   :|:...:.|:  .|   
  Rat   119 VQSQGPGG-----KVVTCAHRYEKRQHVNTKQESRDIFGRCYVLS---QNLRIEDDMDGGDW--- 172

  Fly   176 IEKKQVLKLADTNLIPYYSMG--ELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQEVPSIKT-- 236
                   ...|..|..:...|  :.|::|..:.|...::.||||...|||.|.::|:..:...  
  Rat   173 -------SFCDGRLRGHEKFGSCQQGVAATFTKDFHYIVFGAPGTYNWKGIVRVEQKNNTFFDMN 230

  Fly   237 --SSGRQRRGMNTNRKCNECNPEPKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQF 299
              ..|....|..|:.. ....|.|.|      ||.|:::.||....|. ..:.:|:.|||.|:. 
  Rat   231 IFEDGPYEVGGETDHD-ESLVPVPAN------SYLGFSLDSGKGIVSK-DDITFVSGAPRANHS- 286

  Fly   300 GEAYIF--DIYEDSIYKYHEFRGNHFGEYFGYSVLAEDLNGDGKTDVIISAPLYALRNSYDDGAI 362
            |...:.  |:....:...:.|.|......|||.|...|||.||..|::|.||.|..|:....||:
  Rat   287 GAVVLLKRDMKSAHLLLEYIFDGEGLASSFGYDVAVVDLNADGWQDIVIGAPQYFDRDGEVGGAV 351

  Fly   363 YVFINKGSFTFEERIIRSPAGSGGRFGTTLSRIGDINKDGYNDVAVGAPFAGNGSVFIYLGSENG 427
            ||:||:.......:.:|........||..:..|||||:|||.|:|||||:...|.||||.||..|
  Rat   352 YVYINQQGRWSNVKPVRLNGTKDSMFGIAVKNIGDINQDGYPDIAVGAPYDDLGKVFIYHGSPTG 416

  Fly   428 LRDPPSQCLDAPSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKIHA 492
            :...|:|.|:..:.        .||:.::...|:|.|.:.|.|:|: .:::|.::|:.||:.|  
  Rat   417 IITKPTQVLEGTTP--------FFGYSIAGNMDLDRNSYPDVAVGS-LSDSVTIFRSRPVINI-- 470

  Fly   493 IIKPKLQNVNPEEERVNIT----------VCYRLSSKSDSKAK-----------ALMEQELVIRI 536
                 |:.:.....|:::.          :|.::.:..:..||           .::|.|...| 
  Rat   471 -----LKTITVTPSRIDLRQKSMCGSPSGICLKVKACFEYTAKPSGYNPPISILGILEAEKERR- 529

  Fly   537 DIDTKSKIKLAVFDEEHGSQMSF---------KAKAFHEEICSEFQIEMDKRAKFTPI----ALE 588
                ||.:...|.....||:..:         |.:|..||   ...::.:.|.|..||    ::|
  Rat   530 ----KSGLSSRVQFRNQGSEPKYTQELTLNRQKQRACMEE---TLWLQENIRDKLRPIPITASVE 587

  Fly   589 MQYELSKKIPNSGDFCEDCAVVDPAEPKFVTEYITF-NTGCATD-VCVADLKIS----------- 640
            :|...|::..||  ..|...:::..|.|.|...:.| ..||..| ||.::||:.           
  Rat   588 IQEPSSRRRVNS--LPEVLPILNSNEAKTVQTDVHFLKEGCGDDNVCNSNLKLEYKFGTREGNQD 650

  Fly   641 ------CINASSTLVLGTTAVLRLTYNITN----------NGEFAYHPKF------SVTNSAGLS 683
                  .......|||.....:.|...:||          :|:.|:..|.      ::|.||...
  Rat   651 KFSYLPIQKGIPELVLKDQKDIALEITVTNGPSDPRNPRKDGDDAHEAKLIATFPDTLTYSAYRE 715

  Fly   684 LAQVPG---NCKVNEAVMVCDLNHGQRMAKGDT-------DSLTISFDVRQLRGRSLEIQAEVLS 738
            |...|.   :|..|:.....|...|....:..:       .:..::||...|   .:.::.|..|
  Rat   716 LRAFPEKQLSCVANQNGSQADCELGNPFKRNSSVTFYLILSTTEVTFDTTDL---DINLKLETTS 777

  Fly   739 ARDESNPENNK-------LTNVLSLREKADIYVSGVQTNDHVVLKES------PYTAEVVNYYE- 789
            .:|...|...|       |.:|..:.:.:.:|..|....:..:..|.      .|...|:|..: 
  Rat   778 NQDNLAPITAKAKVVIELLLSVSGVAKPSQVYFGGTVVGEQAMKSEDEVGSLIEYEFRVINLGKP 842

  Fly   790 IKSHGPSTLENLTVSLYIPVAYKTPDSTNVKHIVTSSPKIQSKYAHKIM-----PINFI---DQN 846
            :|:.|.:||     ::..|     .:.:|.|.::... |::||...:::     .|||:   :.:
  Rat   843 LKNLGTATL-----NIQWP-----KEISNGKWLLYLM-KVESKGLEQVVCEPHNEINFLKLKESH 896

  Fly   847 NALANNFAIDHDQSTLLFSATPQHENVGNLSGIVEQNPSISLLNEDLPVNNTLVLNCQDTNVTLC 911
            |:....             ..|:.:        ::.:...||.:|    .....||| ..||. |
  Rat   897 NSRKKR-------------ELPEKQ--------IDDSRKFSLFSE----RKYQTLNC-SVNVR-C 934

  Fly   912 VPVEIRLENGLQLKPEELMNMTVSFTVNLKDADDIWEYFVIQ-TDLKVHKIGDPTLSSFTIE--- 972
            |.:...| .||..|...::..      .|.::..:.||..:. .|:.|....|.|.::..|:   
  Rat   935 VNIRCPL-RGLDSKASLVLRS------RLWNSTFLEEYSKLNYLDILVRASIDVTAAAQNIKLPH 992

  Fly   973 -------KKIESNVICKHAEIAIWKIIVSVIVGILVFSAATYALYKRGFFKRAIKDD 1022
                   ....|..:.:::.||.|.|:::|:.|||:.:...:.|:|.|||||:..||
  Rat   993 AGTQVRVTVFPSKTVAQYSGIAWWIILLAVLAGILMLALLVFLLWKCGFFKRSRYDD 1049

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ItgaPS4NP_611025.2 VCBS 335..408 CDD:290251 29/72 (40%)
Int_alpha 384..434 CDD:214549 25/49 (51%)
Int_alpha 447..>492 CDD:214549 13/44 (30%)
Integrin_alpha2 484..808 CDD:285619 79/416 (19%)
Itga6XP_038960023.1 Int_alpha 40..100 CDD:214549 17/61 (28%)
Int_alpha 254..>292 CDD:214549 13/45 (29%)
Int_alpha 314..364 CDD:214549 21/49 (43%)
Int_alpha 374..425 CDD:214549 26/50 (52%)
Integrin_alpha2 464..939 CDD:400650 100/532 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335757
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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