Sequence 1: | NP_611025.2 | Gene: | ItgaPS4 / 36693 | FlyBaseID: | FBgn0034005 | Length: | 1069 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038960023.1 | Gene: | Itga6 / 114517 | RGDID: | 621633 | Length: | 1090 | Species: | Rattus norvegicus |
Alignment Length: | 1162 | Identity: | 272/1162 - (23%) |
---|---|---|---|
Similarity: | 466/1162 - (40%) | Gaps: | 262/1162 - (22%) |
- Green bases have known domain annotations that are detailed below.
Fly 3 CLLVIVLLALQSEINAYNISPYPNSVLNFPELEGNRRS----SYFGFSLVIR-------EKSIMV 56
Fly 57 AAPRANSSLEAQRNISEPGVIFRCYFESGNNCSPYNIDTKGNYKGMPNDGLLTAKNKDFRWLGGA 121
Fly 122 MD----GGTRDSDKFLVCAPRF---YSINNENDYNN--GMCYWLSDTPKNIDSTEVME--KWPLR 175
Fly 176 IEKKQVLKLADTNLIPYYSMG--ELGLSAHVSDDNSKLLMGAPGIDQWKGSVHLKQEVPSIKT-- 236
Fly 237 --SSGRQRRGMNTNRKCNECNPEPKNFGQEEFSYFGYAVSSGYFDSSNLSTVLYVATAPRGNNQF 299
Fly 300 GEAYIF--DIYEDSIYKYHEFRGNHFGEYFGYSVLAEDLNGDGKTDVIISAPLYALRNSYDDGAI 362
Fly 363 YVFINKGSFTFEERIIRSPAGSGGRFGTTLSRIGDINKDGYNDVAVGAPFAGNGSVFIYLGSENG 427
Fly 428 LRDPPSQCLDAPSQQPSKYGSYMFGHGLSRGSDIDGNGFNDFAIGAPNAEAVYLYRAYPVVKIHA 492
Fly 493 IIKPKLQNVNPEEERVNIT----------VCYRLSSKSDSKAK-----------ALMEQELVIRI 536
Fly 537 DIDTKSKIKLAVFDEEHGSQMSF---------KAKAFHEEICSEFQIEMDKRAKFTPI----ALE 588
Fly 589 MQYELSKKIPNSGDFCEDCAVVDPAEPKFVTEYITF-NTGCATD-VCVADLKIS----------- 640
Fly 641 ------CINASSTLVLGTTAVLRLTYNITN----------NGEFAYHPKF------SVTNSAGLS 683
Fly 684 LAQVPG---NCKVNEAVMVCDLNHGQRMAKGDT-------DSLTISFDVRQLRGRSLEIQAEVLS 738
Fly 739 ARDESNPENNK-------LTNVLSLREKADIYVSGVQTNDHVVLKES------PYTAEVVNYYE- 789
Fly 790 IKSHGPSTLENLTVSLYIPVAYKTPDSTNVKHIVTSSPKIQSKYAHKIM-----PINFI---DQN 846
Fly 847 NALANNFAIDHDQSTLLFSATPQHENVGNLSGIVEQNPSISLLNEDLPVNNTLVLNCQDTNVTLC 911
Fly 912 VPVEIRLENGLQLKPEELMNMTVSFTVNLKDADDIWEYFVIQ-TDLKVHKIGDPTLSSFTIE--- 972
Fly 973 -------KKIESNVICKHAEIAIWKIIVSVIVGILVFSAATYALYKRGFFKRAIKDD 1022 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
ItgaPS4 | NP_611025.2 | VCBS | 335..408 | CDD:290251 | 29/72 (40%) |
Int_alpha | 384..434 | CDD:214549 | 25/49 (51%) | ||
Int_alpha | 447..>492 | CDD:214549 | 13/44 (30%) | ||
Integrin_alpha2 | 484..808 | CDD:285619 | 79/416 (19%) | ||
Itga6 | XP_038960023.1 | Int_alpha | 40..100 | CDD:214549 | 17/61 (28%) |
Int_alpha | 254..>292 | CDD:214549 | 13/45 (29%) | ||
Int_alpha | 314..364 | CDD:214549 | 21/49 (43%) | ||
Int_alpha | 374..425 | CDD:214549 | 26/50 (52%) | ||
Integrin_alpha2 | 464..939 | CDD:400650 | 100/532 (19%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C166335757 | |
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.840 |